PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G035370_P04

Common Name

LOC103645799

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

G2-like

Protein Properties

Length: 424aa MW: 46459.4 Da PI: 7.3456

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G035370_P04	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.8	2.1e-32	249	303	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHerFv+ v+qLGG++kAtPk il+lm+ +gLt++h+kSHLQkYR+ GRMZM2G035370_P04 249 KTRIRWTQDLHERFVDSVNQLGGADKATPKGILKLMNSDGLTIYHIKSHLQKYRI 303 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.649	246	306	IPR017930	Myb domain
SuperFamily	SSF46689	2.51E-17	247	303	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.2E-30	248	304	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.1E-24	249	304	IPR006447	Myb domain, plants
Pfam	PF00249	8.6E-8	253	302	IPR001005	SANT/Myb domain
Pfam	PF14379	2.8E-21	335	381	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MMDAKKIKLH DYHLYGSQQL FPAAGGLSFH PAAGLMSSLP QPPHAAWLHE DHHTTTPRSV 60 LATHGSLQGS RCVGSDAAAF FAAEELMMGM PRFDDCPLGG TEMTAFAKRP TTEDEQLHYR 120 RPGPVDPLPL RDSAAVRTYY VRPQQRDGAT EAPPSLELPF QQGRRQQQQL FGNASTGRLL 180 GGEPKAHSFT AHVATSTLLP AMEAPAGMQQ SPTENPLSRS CSTIGAPATH VGSGNVAAAA 240 APGHGAPSKT RIRWTQDLHE RFVDSVNQLG GADKATPKGI LKLMNSDGLT IYHIKSHLQK 300 YRIAKYMPAS STSEGKQEKR AVGNDVQNLD PSTGMKITEA LRVQLDVQRR LHEQLEIQRN 360 LQLRIEVQGK KLQKMFEEQM KASRTVMEPR QEEEDDDDDA FNDVHVQLLA AAARSDAGFQ 420 LNIS

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MMDAKKIKLH DYHLYGSQQL FPAAGGLSFH PAAGLMSSLP QPPHAAWLHE DHHTTTPRSV  60
LATHGSLQGS RCVGSDAAAF FAAEELMMGM PRFDDCPLGG TEMTAFAKRP TTEDEQLHYR  120
RPGPVDPLPL RDSAAVRTYY VRPQQRDGAT EAPPSLELPF QQGRRQQQQL FGNASTGRLL  180
GGEPKAHSFT AHVATSTLLP AMEAPAGMQQ SPTENPLSRS CSTIGAPATH VGSGNVAAAA  240
APGHGAPSKT RIRWTQDLHE RFVDSVNQLG GADKATPKGI LKLMNSDGLT IYHIKSHLQK  300
YRIAKYMPAS STSEGKQEKR AVGNDVQNLD PSTGMKITEA LRVQLDVQRR LHEQLEIQRN  360
LQLRIEVQGK KLQKMFEEQM KASRTVMEPR QEEEDDDDDA FNDVHVQLLA AAARSDAGFQ  420
LNIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-22	249	306	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-22	249	306	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-22	249	306	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-22	249	306	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-22	249	306	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-22	249	306	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-22	249	306	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-22	249	306	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-22	249	306	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-22	249	306	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-22	249	306	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-22	249	306	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.21013	0.0	endosperm

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G035370

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G035370_P04

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT068513	0.0	BT068513.1 Zea mays full-length cDNA clone ZM_BFb0272J03 mRNA, complete cds.
GenBank	EU957486	0.0	EU957486.1 Zea mays clone 1594418 transfactor mRNA, complete cds.
GenBank	KJ726831	0.0	KJ726831.1 Zea mays clone pUT3371 G2-like transcription factor (GLK52) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008668740.1	0.0	protein PHOSPHATE STARVATION RESPONSE 1 isoform X5
Refseq	XP_020403667.1	0.0	protein PHOSPHATE STARVATION RESPONSE 1 isoform X5
TrEMBL	A0A1D6DUN2	0.0	A0A1D6DUN2_MAIZE; Myb family transcription factor PHL5
STRING	GRMZM2G035370_P01	0.0	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	1e-62	G2-like family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G035370_P04
Entrez Gene	103645799