PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G035156_P01
Common NameLOC103631776, Zm.28335
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 92aa    MW: 10358.6 Da    PI: 7.3653
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G035156_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.1e-0720591554
                       HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       +i +  ++L++llP+a  +++ ++  a +L+++++YI++L
  GRMZM2G035156_P01 20 QISDLVSKLQDLLPEARLQSNARVPSARVLQETCNYIRNL 59
                       789999*********889********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.7E-9378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.442559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-91881IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-52059IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSNRRSRSRQ SGSSRITEEQ ISDLVSKLQD LLPEARLQSN ARVPSARVLQ ETCNYIRNLH  60
QEVDDLSERL SELLATSDMS SAQAAVIRSL LM
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G035156
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway. {ECO:0000269|PubMed:22363621}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G035156_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0695698e-81AK069569.1 Oryza sativa Japonica Group cDNA clone:J023022K12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008651476.13e-58transcription factor ILI6
SwissprotB8APB52e-44ILI6_ORYSI; Transcription factor ILI6
SwissprotQ0DUR22e-44ILI6_ORYSJ; Transcription factor ILI6
TrEMBLA0A1D6JQ586e-57A0A1D6JQ58_MAIZE; Transcription factor PRE3
TrEMBLA0A317Y4L46e-57A0A317Y4L4_MAIZE; Transcription factor ILI6
STRINGGRMZM2G035156_P011e-57(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26753378
Representative plantOGRP18771240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.14e-32bHLH family protein