PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G034876_P02
Common NameGRF1, GRF6
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRF
Protein Properties Length: 408aa    MW: 42655.4 Da    PI: 7.6029
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G034876_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.99.8e-25120164145
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  GRMZM2G034876_P02 120 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVET 164
                        79****************************************997 PP
2QLQ62.51.1e-215994237
                QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                       +FT+aQ q+L++Q+l+yKyL+a++PvPp+L+++i++
  GRMZM2G034876_P02 59 PFTPAQYQELEQQALIYKYLVAGVPVPPDLVVPIRR 94
                       9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.0E-125894IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.7E-155993IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.4595994IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.486120164IPR014977WRC domain
PfamPF088794.2E-21121163IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MAMPYASLSP AGAADHRSST ATASLVPFCR STPLSAGGGL GEEDAQASAR WPAARPVVPF  60
TPAQYQELEQ QALIYKYLVA GVPVPPDLVV PIRRGLDSLA TRFYGQPTLG YGPYLGRKLD  120
PEPGRCRRTD GKKWRCSKEA APDSKYCERH MHRGRNRSRK PVETQLAPQS QPPAAAAVSA  180
APPLAAAAAA TTNGSGFQNH SLYPAIAGST GGGGGVGGSG NISSPFSSSM GGSSQLHMDS  240
AASYSYAALG GGTAKDLRYN AYGIRSLADE HNQLIAEAID SSIESQWRLP SSSFPLSSYP  300
HLGALGDLGG QNSTVSSLPK MEKQQPPSSF LGNDTGAGMA MGSASAKQEG QTLRHFFDEW  360
PKARDSWPGL SDETASLASF PPATQLSMSI PMASSDFSVA SSQSPNDD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.206030.0meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G034876
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in developing leaves. {ECO:0000269|PubMed:24854713, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in developing leaves (PubMed:26036253). Component of a network formed by the microRNA396 (miRNA396), the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function and the transition between cell division and cell expansion in growing leaves (PubMed:26036253). {ECO:0000269|PubMed:26036253}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G034876_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279720.0KJ727972.1 Zea mays clone pUT6086 GRF transcription factor (GRF6) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008680931.10.0putative growth-regulating factor 1 isoform X1
SwissprotA0A060D7640.0GRF1_MAIZE; Growth-regulating factor 1
TrEMBLA0A3L6EQL50.0A0A3L6EQL5_MAIZE; Growth-regulating factor 4
STRINGGRMZM2G034876_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.18e-48growth-regulating factor 5
Publications ? help Back to Top
  1. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]
  2. Nelissen H, et al.
    Dynamic Changes in ANGUSTIFOLIA3 Complex Composition Reveal a Growth Regulatory Mechanism in the Maize Leaf.
    Plant Cell, 2015. 27(6): p. 1605-19
    [PMID:26036253]