PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G034868_P02
Common NameZm.80242
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family FAR1
Protein Properties Length: 772aa    MW: 89257.2 Da    PI: 5.5068
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G034868_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.72.2e-24129215290
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         Y++Y++++GFsvrk k+++ + +++i +++++Cskeg +++e+ +  +++ +++etrt+Cka+++ + +++g+w+v+++  eHnHel+
  GRMZM2G034868_P02 129 LYCDYGHRMGFSVRKGKQYYFTGTKTIRTKDYYCSKEGLKDDEQLT--EANFNKPETRTNCKAMVRFRVDSEGQWRVIQIIPEHNHELV 215
                        7*****************************************9988..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.8E-22129215IPR004330FAR1 DNA binding domain
PfamPF105513.0E-25327419IPR018289MULE transposase domain
PROSITE profilePS509669.495606644IPR007527Zinc finger, SWIM-type
PfamPF044340.0013614637IPR007527Zinc finger, SWIM-type
SMARTSM005756.8E-5619646IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 772 aa     Download sequence    Send to blast
MTLSLFTTLP STPPSVLCHH HQLRSSSFAF SVMEGTTISI EIDGEAICLD SVGDNEQEAA  60
ENGEMHQTIY TDENGEQVAF DNQEQGREED LAGNGEEDRD HNSIIPSREE LTEELRNKVA  120
YSEEEAYRLY CDYGHRMGFS VRKGKQYYFT GTKTIRTKDY YCSKEGLKDD EQLTEANFNK  180
PETRTNCKAM VRFRVDSEGQ WRVIQIIPEH NHELVRPEEI HLLRSVRTLS VPKSGVLNAM  240
VNAEIQAMHD NLHINEDGTE CHSQLSIRSY TLLEPKECEA LVGYFKRRTN EQCMFYWDVE  300
VDQEGRMTNF FWRDGKSRVD YDSFRDVVIF DTSYLTNKYN MICAPFIGLN NHRQNVMFGC  360
AFLLDESLTS YEWLFKSFLE SVGGRPPETI FTDQNEFISK AIEVVLPGTR HCLCQQLIEK  420
KLMSHLGSIN DSGTLHSLFS KCMRECESEA ELDETWAMMH HEYNMQEHPW LTDLYQQRHK  480
WCSALHKDAF DGGIESMDRN ESLNNVLSNI DDESASLSTF VLELDKLAGS WRKTESLEDI  540
QCNQAAPECT VKHNRILQHA AEVYTHKVYK SIETDFLDGC SATSYQAAQC NETLHKFEFL  600
LENSPNVSVV FLNTSTMELS CTCKKFETMR ILCSHALNAL VLKNVDRIPE RYILNRWTKY  660
ARKGTYPFPV DEFAEQDRTE VAFVYRNRAM WFVYDLLTKS KSHHNTRKLI LDALENGEKS  720
LESMCDLKRL HMNTLGKEKD GSRVEKRKKK STKQEKHSSI SFHLHSSCFS ND
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.802420.0embryo| endosperm| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G034868
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G034868_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0690660.0BT069066.1 Zea mays full-length cDNA clone ZM_BFb0161A09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008672512.10.0uncharacterized LOC100274145 isoform X1
TrEMBLC0PL970.0C0PL97_MAIZE; Uncharacterized protein
STRINGGRMZM2G034868_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-77FAR1-related sequence 5