PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G034840_P02
Common NameARF4
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 936aa    MW: 102930 Da    PI: 6.1207
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G034840_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.61.2e-23144245199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k lt sd++++g +++p++ ae+       ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v+F   +
  GRMZM2G034840_P02 144 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFI--R 232
                        89*********************999*****9555555.49************************************************..4 PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                        +++ +l+v+v+r+
  GRMZM2G034840_P02 233 DEKSQLLVGVRRA 245
                        577778*****97 PP
2Auxin_resp109.53.5e-36270352183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaas++  F+v+YnPr+s+s Fv+++++++ a++ + svGmRf m+fete+ss+rr++Gt+vg+sd++p+rWpnSkWr+L+
  GRMZM2G034840_P02 270 AAHAASSGGSFTVYYNPRTSPSPFVIPLARYNMATYLQPSVGMRFAMMFETEESSKRRCTGTIVGISDYEPMRWPNSKWRNLQ 352
                        79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-44134273IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.5E-41137258IPR015300DNA-binding pseudobarrel domain
CDDcd100173.94E-21143244No hitNo description
PfamPF023623.4E-21144245IPR003340B3 DNA binding domain
SMARTSM010197.1E-23144246IPR003340B3 DNA binding domain
PROSITE profilePS5086312.83144246IPR003340B3 DNA binding domain
PfamPF065073.3E-32270352IPR010525Auxin response factor
PROSITE profilePS5174523.2833917IPR000270PB1 domain
PfamPF023091.5E-8844920IPR033389AUX/IAA domain
SuperFamilySSF542774.84E-8852912No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 936 aa     Download sequence    Send to blast
MMTSSYEKAT SGVLRNAAAL LDEMQLMGET QGAKKVINSE LWHACAGPLV CLPQRGSLVY  60
YFPQGHSEQV AATTKKIPNS RIPNYPSLPS QLLCQVHNIT LHADKETDEI YAQMTLQPVH  120
SETDVFPIPT LGAYTKSKHP SEYFCKNLTA SDTSTHGGFS VPRRAAEKLF PQLDYSMQPP  180
NQELIVRDLH DNMWTFRHIY RGQPKRHLLT TGWSLFVGAK RLKAGDSVLF IRDEKSQLLV  240
GVRRATRQQP ALSSSVLSTD SMHIGVLAAA AHAASSGGSF TVYYNPRTSP SPFVIPLARY  300
NMATYLQPSV GMRFAMMFET EESSKRRCTG TIVGISDYEP MRWPNSKWRN LQVEWDEHGY  360
GERPERVSLW DIETPENMVF SSPLNSKRQC LPSYGVSGLH VSSISKPQGS PFGNLQHMPG  420
ISSDIALLLL NQSAQNLGSS IACQQSSFSS IIQNAKQSYF PPTTLGASTG WNESQQQLNA  480
LGIQKGDQVS CDVQPGIDSI TAPEMNVKPR VPRSTDSYSS QSISDPNSKS DPKTKTRRSK  540
KSSSHKTISD KSEISSVPSQ ICDKQRHGSE PTSADFEAEQ ATCGNNEDSS GALTRGDFAG  600
ELQVQQVEQD GLLPPPKLES SKSPDGGKSV SSFPNQGCFS QFFEGLDWMI PPSCYQDSNG  660
IHSVTTSDSI FNPSEGIPPS TMNADGMDAF QTSCLSECFP NSIQEFISSP DINTLTFMSP  720
EMQHLDAQHD GSNLQSTSNS YVQMSFSEES QSASLSGLHM EAVHINSSCL QPLATGSFDA  780
GTFSKLSNIK ECQALPLQEI HNSSMGTPSC SMDAAAVEYC MDRSVKPLKP PVRTYTKVQK  840
LGSVGRSIDV TRFRDYHELR SAIACMFGLQ GKLEHPGSSD WKLVYVDYEN DVLLVGDDPW  900
EEFINCVRCI RILAPSEVQQ MSENGVHVLN DCMQMA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.01837531390Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.243710.0ear| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G034840
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G034840_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666320.0BT066632.1 Zea mays full-length cDNA clone ZM_BFb0041D15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008668389.10.0auxin response factor 4 isoform X1
SwissprotQ01K260.0ARFK_ORYSI; Auxin response factor 11
SwissprotQ8S9830.0ARFK_ORYSJ; Auxin response factor 11
TrEMBLA0A1D6DUR00.0A0A1D6DUR0_MAIZE; Auxin response factor
STRINGGRMZM2G034840_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86733241
Representative plantOGRP82601216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein
Publications ? help Back to Top
  1. Shen C, et al.
    Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
    J. Exp. Bot., 2010. 61(14): p. 3971-81
    [PMID:20693412]
  2. Indoliya Y, et al.
    Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
    Sci Rep, 2016. 6: p. 23050
    [PMID:26973288]