PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G033656_P01 | ||||||||
Common Name | EREB150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 25489.8 Da PI: 7.9272 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.1 | 7.9e-12 | 45 | 93 | 4 | 56 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +GVr + +g W+AeIr p++ r r ++g+f a +Aa a++aa+ +++ge GRMZM2G033656_P01 45 TGVR-ERLWGGWAAEIRIPRT---RSRLWVGRFQHALQAALAYDAAMFCFYGE 93 6998.777**********965...4************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 17.517 | 43 | 104 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-12 | 43 | 110 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-12 | 44 | 95 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-19 | 44 | 105 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.9E-6 | 46 | 93 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.01E-17 | 46 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MTMTAPSSSS GAATRGRPQP QQHRGGRSVT AAAGARRPHK DLGWTGVRER LWGGWAAEIR 60 IPRTRSRLWV GRFQHALQAA LAYDAAMFCF YGERLPSQRK FNFPAAPRPA IPDHLRARLT 120 VANIKAIAAD YGRSCAAFFL APAQLCPSAP AAAAASTTPP LMVVPPATES AAAAAAAASA 180 EEAVVSTTTD HVVPAAASNA GNHVDGGFME TADCLLSCNP DDFVGVLEDM DDVDLFIGQQ 240 HN |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G033656 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G033656_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727514 | 0.0 | KJ727514.1 Zea mays clone pUT5373 AP2-EREBP transcription factor (EREB150) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008666485.1 | 1e-174 | ethylene-responsive transcription factor ERF015 | ||||
TrEMBL | A0A060D144 | 1e-175 | A0A060D144_MAIZE; AP2-EREBP transcription factor (Fragment) | ||||
STRING | GRMZM2G033656_P01 | 1e-176 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5444 | 25 | 55 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31060.1 | 7e-15 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G033656_P01 |