PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G033230_P01 | ||||||||
Common Name | LOC100191786, ZEAMMB73_085715 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 235aa MW: 25091.9 Da PI: 6.1716 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.4 | 4.2e-10 | 76 | 119 | 8 | 51 |
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 rr NReA r++R++Kka+ + Le +vk+L a N++L +l+ GRMZM2G033230_P01 76 RRPLGNREAVRKYREKKKARAAFLEGEVKKLRAANQQLVRRLQD 119 67778*********************************977764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.6E-10 | 67 | 136 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.7E-15 | 68 | 137 | No hit | No description |
Pfam | PF07716 | 3.8E-13 | 73 | 126 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.13E-7 | 75 | 120 | No hit | No description |
CDD | cd14686 | 8.91E-11 | 76 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MDDGADLPCQ LLFSHPEMPH SFDEFFSSAT TTTTCTHTHS CDPPGPSAAM HTHTCLHTHT 60 QVLGSGGEDD GSAKPRRPLG NREAVRKYRE KKKARAAFLE GEVKKLRAAN QQLVRRLQDH 120 AALEAEVARL RGLLLDVRGR IDAEVGVSPF QRPCSAGSVE CGADPALRFD GSSEVVGGGG 180 WEKSSSPQVA DCRIDEGGGG MSRELDVLEG LRHSIDAGAT FVSSDSLAER SCLPG |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G033230 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G033230_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033992 | 0.0 | BT033992.1 Zea mays full-length cDNA clone ZM_BFc0044L12 mRNA, complete cds. | |||
GenBank | KJ727599 | 0.0 | KJ727599.1 Zea mays clone pUT5459 bZIP transcription factor (bZIP108) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020397437.1 | 1e-171 | putative bZIP transcription factor superfamily protein isoform X1 | ||||
Swissprot | Q8VY76 | 1e-49 | BZP19_ARATH; Basic leucine zipper 19 | ||||
TrEMBL | K7VWP5 | 1e-170 | K7VWP5_MAIZE; Basic leucine zipper 24 | ||||
STRING | GRMZM2G033230_P01 | 1e-171 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3831 | 36 | 75 | Representative plant | OGRP1970 | 15 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35040.1 | 2e-23 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G033230_P01 |
Publications ? help Back to Top | |||
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