PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G033138_P02
Common NameLOC100275240
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HB-other
Protein Properties Length: 535aa    MW: 59670.5 Da    PI: 5.0479
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G033138_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.65e-09255298952
                        HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
           Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                        +  +e+L ++F++n  p ++ +e L+++lg++ +++  WF+N R
  GRMZM2G033138_P02 255 PAAVEVLRRAFAENELPPRDVKENLSRELGISFEKIDKWFKNTR 298
                        67799*************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.102.0E-9156IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002490.0018154IPR001965Zinc finger, PHD-type
PfamPF006281.6E-7155IPR019787Zinc finger, PHD-finger
PROSITE profilePS500169.73156IPR019787Zinc finger, PHD-finger
SuperFamilySSF579032.66E-9258IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:1.10.10.604.2E-11240298IPR009057Homeodomain-like
SuperFamilySSF466895.99E-10241306IPR009057Homeodomain-like
SMARTSM003894.1E-9244308IPR001356Homeobox domain
PROSITE profilePS5007111.855244304IPR001356Homeobox domain
CDDcd000861.72E-9248308No hitNo description
PfamPF000461.4E-6255298IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MCSTCKSHES FPSNKIIFCK GPCKRACHEK CLEPPLNKSV LPTSSHGWLC KFCLCKVRIL  60
ETINAHLGTS FTVKCHFEDI FKETTELIDS EDALDEDWLS EYSGDEDYDP DENEASGDCM  120
DSGEKIMSDD SNGSGSPLYS PNDDIPDFIS ADLNVVEGFC HTNLDLGIDA VEDDFAQILT  180
YQRPRRDVDY RRLNEEMFGK ITGNEEQSED EDWGHERRKK RTHSGVAGDN SVGFLNVISD  240
EKSQKKGRKL FRIPPAAVEV LRRAFAENEL PPRDVKENLS RELGISFEKI DKWFKNTRCA  300
ALRDRKAEGN SHNTAPSKSS KNKGKAGISG KTGRNGHVTG PCNNLRTNEE KTGISGKFDS  360
GDNSCLVPFS EVINVPTRLP HNFEMRKMES TRSPARLHNK GGFLSATVQI KESTLLPTGK  420
PCWQSEMSHP TTNEVSTSAQ ATTWIDAGAC AEEQEPTPWV DIGVSDYQPF LDVIDDMCGL  480
EWRLQRLKEN MLSSSIDGQT AASESDKRNQ TVVLVPTAEL KEKLPHDGLF GHYCP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218222KKRTH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.288450.0cell culture| ear| embryo| endosperm| meristem| ovary| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G033138
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G033138_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9489540.0EU948954.1 Zea mays clone 391409 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001357958.10.0uncharacterized protein LOC100275240 isoform 1
TrEMBLA0A1D6H0U90.0A0A1D6H0U9_MAIZE; Pathogenesis-related homeodomain protein
STRINGGRMZM2G033138_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.22e-53pathogenesis related homeodomain protein A