PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G033014_P01
Common NameLOC100273444
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 315aa    MW: 33779.7 Da    PI: 8.4046
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G033014_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM50.47.3e-16161476128
                NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeek.ewyfFskrdkkyatgkrknratk..sgyWkatgkdk 90 
                        r +P+d  lv+ +L + v+    ++   ++ vd+y+++P++L +    +v+ + +  wyf s+ + k++++ rk r+++  +g W++    k
  GRMZM2G033014_P01  16 RAQPSDATLVNAFLWPWVTLGI-TMPGGVHAVDLYSADPEKLARgyqpEVSLDGQcTWYFLSPLRPKSPHDPRKVRTVAdgTGCWRSDSGVK 106
                        568**************98776.45468**************854555443344459*******************66634778**999999 PP

                NAM  91 evlsk..kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                        +v++   + ++vg ++ + f +   a    ++ W m e++l
  GRMZM2G033014_P01 107 NVIDCldGARHVGYRQNFSFMRRdAAGADARSGWAMTEFHL 147
                        99887778899**********7625556679********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.50211171IPR003441NAC domain
SuperFamilySSF1019413.14E-2414170IPR003441NAC domain
PfamPF023654.0E-1016147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MSRSDSPSPS PAAARRAQPS DATLVNAFLW PWVTLGITMP GGVHAVDLYS ADPEKLARGY  60
QPEVSLDGQC TWYFLSPLRP KSPHDPRKVR TVADGTGCWR SDSGVKNVID CLDGARHVGY  120
RQNFSFMRRD AAGADARSGW AMTEFHLHHS YDEHGHGGKV EGLVLCKMYR NRNRRIHGGS  180
DDVVPGVSPC AEKTFSCGKS QPIGHDYSKA KNSDGGATAT GTIAPPLLNS MVAGDDKVSG  240
ATTTTTAPPL GHKGNPVEMD NEDLLTWAPA RKKMRAAGAG AESSEAASTV SNPTPDQVRC  300
PRCGFHFTTM QSSRS
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G033014
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G033014_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0411470.0BT041147.1 Zea mays full-length cDNA clone ZM_BFc0181I03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141353.10.0uncharacterized protein LOC100273444
TrEMBLB4FVK90.0B4FVK9_MAIZE; NAC domain-containing protein 72
TrEMBLK0DG450.0K0DG45_MAIZE; NAC28 NAC type transcription factor (Fragment)
STRINGGRMZM2G033014_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1966278
Representative plantOGRP1956722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.23e-08NAC family protein