PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G032180_P01 | ||||||||
Common Name | MYBR4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 227aa MW: 25001.9 Da PI: 6.7278 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.1 | 1.3e-15 | 34 | 77 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + + +E++++v + k+lG++ W++Ia++m+ gRt++++k++w+++ GRMZM2G032180_P01 34 EPISRQEEDRIVSLQKLLGNR-WSAIAARMP-GRTDNEIKNYWNSL 77 567889***************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-5 | 9 | 26 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.84E-20 | 13 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.333 | 14 | 27 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-22 | 27 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.399 | 28 | 82 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-13 | 32 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.92E-11 | 35 | 78 | No hit | No description |
Pfam | PF00249 | 2.4E-13 | 35 | 77 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MDGYDRGAHA GLERSGKSCR LRWMNYLQPD LSREPISRQE EDRIVSLQKL LGNRWSAIAA 60 RMPGRTDNEI KNYWNSLIKK KKKKKLKQSM DTGGGGGDYH QSLPGPEPEP EVHRTAAHEG 120 SSAGMYTTTG TGHIDTSEVR VEHGGTTASH NNDSADHPRP SPLPQLPVFA GQVLLDPDAA 180 VRNGEQTAAP AQASSLSLIP FPKSREMNFV EEYVQFLVSL SDDLLEI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-18 | 14 | 81 | 40 | 107 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 78 | 84 | KKKKKKK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G032180 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G032180_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727821 | 0.0 | KJ727821.1 Zea mays clone pUT5773 MYB-related transcription factor (MYBR4) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008669936.1 | 1e-162 | transcription factor MYB82 isoform X1 | ||||
TrEMBL | A0A060D1D4 | 1e-168 | A0A060D1D4_MAIZE; MYB-related transcription factor (Fragment) | ||||
STRING | GRMZM2G032180_P01 | 1e-169 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8703 | 25 | 45 | Representative plant | OGRP19762 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12870.1 | 1e-31 | myb domain protein 46 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G032180_P01 |