PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G031983_P01
Common NameGATA15
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 370aa    MW: 39512.8 Da    PI: 9.7009
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G031983_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.12.8e-19191224134
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                        Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  GRMZM2G031983_P01 191 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 224
                        *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.3E-19185237IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-12188225No hitNo description
Gene3DG3DSA:3.30.50.102.5E-15189224IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.466189221IPR000679Zinc finger, GATA-type
CDDcd002023.87E-15190222No hitNo description
PROSITE patternPS003440191216IPR000679Zinc finger, GATA-type
PfamPF003205.3E-17191224IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MSTVFMTQLP RTLRLMEGEQ DQGLFPASTF HVAKDPPILF PFMITSPVHV DQLQGQSSYG  60
DQHLGQHVLS ESTQQFTDRT MISGSEVFPR RPSPFGQTIQ SIDGDMIQPS AYDPYDIVEN  120
QRTEGLSGGG WTVSSSSSSP PAKMKIMRKA TSEYPEGGAA RKPRRRAQAH QDESQLLTMQ  180
QQAMGVVVRV CSDCNTTKTP LWRSGPRGPK SLCNACGIRQ RKARRAMVAA AAAAAASNGG  240
APPQAVSGVA TQQQPKPKPA RKEKRSDAAD RSLPFKKRCK MVVVDHAAGA AAATATPEAA  300
AARSTKDQAD HVSGDKQVVA PAAAMRSLDQ SEIATPPPSA VSSFHAAFPA DEITDAAMLL  360
MTLSCGLVRS
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G031983
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in leaves and stems, and, at low levels, in roots. {ECO:0000269|PubMed:23548780}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G031983_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280500.0KJ728050.1 Zea mays clone pUT6196 C2C2-GATA transcription factor (GATA15) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645645.10.0putative GATA transcription factor 22 isoform X2
SwissprotQ6YW481e-104CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A060CYH30.0A0A060CYH3_MAIZE; C2C2-GATA transcription factor (Fragment)
STRINGGRMZM2G031983_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.14e-18cytokinin-responsive gata factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]