PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G031963_P01
Common NameZEAMMB73_705905, Zm.31897
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 672aa    MW: 71694.4 Da    PI: 7.1967
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G031963_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.8e-31282339260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        +Dgy+WrKYGqK+vk se+prsY++Ct+++C vkkkvers+ +++v+ei+Y+g+Hnh+k
  GRMZM2G031963_P01 282 EDGYSWRKYGQKQVKHSEYPRSYFKCTHPNCLVKKKVERSH-EGHVTEIIYKGTHNHPK 339
                        8****************************************.***************85 PP
2WRKY104.84.7e-33497555159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k+v++tYeg+Hnhe
  GRMZM2G031963_P01 497 LDDGYRWRKYGQKVVKGNPNPRSYYKCTQPGCTVRKHVERASHDLKAVITTYEGKHNHE 555
                        59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.114276340IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.1E-27277340IPR003657WRKY domain
SuperFamilySSF1182906.8E-25278340IPR003657WRKY domain
SMARTSM007741.7E-34281339IPR003657WRKY domain
PfamPF031061.5E-23282338IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.0E-37482557IPR003657WRKY domain
SuperFamilySSF1182901.02E-28489557IPR003657WRKY domain
PROSITE profilePS5081137.78492557IPR003657WRKY domain
SMARTSM007745.4E-38497556IPR003657WRKY domain
PfamPF031065.0E-25498555IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MEGHVAMGWK DPNPGQESSM VFQSRAVRPD TVEGHSNEDV EAGFEKHGLS AALNSPQHEG  60
RSLPLTPQFG QNSSPGSSLA ERMQARAGFK VPKLNMPFST VAGDDSSVPG APSPYLTIPP  120
GLSPATLLES PVFISNALGQ ASPTTGKLFL FGSTNDNDPI RPGGPPVGDG TDAFSFKPLD  180
LKSSHYTAEV MKEQNTQSSV KTEAKTQAVQ EANLLGQLNQ QNHDGQTNMN SDGARDSKLS  240
RLASGTGAGN EHASPPDYGQ RAEEADARED YPAAMAVTAP AEDGYSWRKY GQKQVKHSEY  300
PRSYFKCTHP NCLVKKKVER SHEGHVTEII YKGTHNHPKP TQSRRPGAGA HPLGGGAQAD  360
AADNLQGSQA NAAEANQAWR AGVQDGVDAT SPPSVPGELC DSAASMQVDC AARFGSPEGA  420
DVTSAVSDEV DGDDRVTLTH GGANAAEGDE LESKRRADRL SGYFRKLESY AIDMSTASRA  480
VREPRVVIQT TSEVDILDDG YRWRKYGQKV VKGNPNPRSY YKCTQPGCTV RKHVERASHD  540
LKAVITTYEG KHNHEVPAAR NSGHPSAAAA PGAGGPRRQE HPSVHDGLMR QHLGGCGVPF  600
GLPPPPPPPR DPLAPMRNYP TYGFTALGAG STSLPSLPML PVLAPSSLHQ HPLLRHRQAV  660
QAAGLAWRPR PT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-37282558878Probable WRKY transcription factor 4
2lex_A8e-37282558878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G031963
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G031963_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277360.0KJ727736.1 Zea mays clone pUT5677 WRKY transcription factor (WRKY59) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008663304.10.0probable WRKY transcription factor 34
TrEMBLA0A3L6G6P10.0A0A3L6G6P1_MAIZE; Putative WRKY transcription factor 2
STRINGGRMZM2G031963_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-115WRKY DNA-binding protein 2