PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G031905_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TCP | ||||||||
Protein Properties | Length: 144aa MW: 16009 Da PI: 10.4412 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 70.1 | 7.4e-22 | 98 | 143 | 3 | 48 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdskti 48 ++d hski T++g dRR+Rls+ +a++fF+Lqd+LGfdk+skt+ GRMZM2G031905_P01 98 FRTDWHSKIRTAQGVHDRRMRLSVGVAREFFALQDRLGFDKASKTV 143 689******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.8E-20 | 99 | 143 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 23.951 | 99 | 144 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MGPPGSAHSL PDSGCAQEKI GFRWRQLYLP PLTPPSPSSP LPDPDNHTAQ IRIHLVQHDR 60 GYRISASEGE RELPSNGLPP VVDDAGNQAA TVLRKRPFRT DWHSKIRTAQ GVHDRRMRLS 120 VGVAREFFAL QDRLGFDKAS KTVN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.39804 | 1e-96 | tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G031905 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G031905_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU961498 | 2e-94 | EU961498.1 Zea mays clone 235951 teosinte branched1 protein mRNA, complete cds. | |||
GenBank | KJ727762 | 2e-94 | KJ727762.1 Zea mays clone pUT5707 TCP transcription factor (TCP11) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001148951.2 | 9e-41 | teosinte branched1 protein | ||||
TrEMBL | A0A060D6L2 | 2e-39 | A0A060D6L2_MAIZE; TCP transcription factor (Fragment) | ||||
STRING | GRMZM2G031905_P01 | 1e-102 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4052 | 31 | 72 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 1e-18 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G031905_P01 |