PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G031882_P02

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

WOX

Protein Properties

Length: 516aa MW: 52897.7 Da PI: 7.4995

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G031882_P02	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.1	2.2e-16	70	130	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++ +eq+++Le+ F++ +p ++e+ ++ ++l ++ +++V++WFqNr+ + k+ GRMZM2G031882_P02 70 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIPRIRMRLqqygQVGDANVFYWFQNRKSRSKN 130 89***************99***********************************995 PP
2	Wus_type_Homeobox	109.8	1.5e-35	69	131	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P+++ei ri+++L++yG+++d+NVfyWFQNrk+R+++k GRMZM2G031882_P02 69 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIPRIRMRLQQYGQVGDANVFYWFQNRKSRSKNK 131 579**********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.55E-11	66	132	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.993	66	131	IPR001356	Homeobox domain
SMART	SM00389	1.5E-6	68	135	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.9E-6	69	133	IPR009057	Homeodomain-like
CDD	cd00086	4.13E-6	69	131	No hit	No description
Pfam	PF00046	4.8E-14	70	129	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MASSSFNNSH WPSMFRSKHA AEPCQTTQPD ISSSPPSLLS AGGASTTTTT GRCLKHSISV 60 GGEERAPDPK PRWNPRPEQI RILEAIFNSG MVNPPRDEIP RIRMRLQQYG QVGDANVFYW 120 FQNRKSRSKN KLRSSTAGTG RLGLQGLARA PGRGAAAAPP PVEPPPLVQN QFHMLASPAQ 180 APTSSSSSSS DRSSGSSKPA AEPAMPATAA PMDLLGPLAA ACPQMYYQGS PVAPAHKVLD 240 LVASVEPVFQ PWPQGYCLSA AEVATILGGQ YMHVPVQQQP PAPLPAGALL GLCNDVTEPT 300 AVVTGHKTCA WGPAGLGQSW PCGGADHHQP GKNNNTAARE LAHEDDATKL GLLQYGFGAT 360 TAMEAAPAVA PLAASPAGGA VTMASVSAST AGLTGFPAST NGVVANYDLL QAGLAVPGGG 420 AGAGRAPAAV AVAADAAPTA AQEGVVALCI TDSITGKSVA HNVAAARLDV RAQFGEAAVL 480 LRCGGERGLD LEPVPVDASG CTVEPLQRGA FYYVLL

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MASSSFNNSH WPSMFRSKHA AEPCQTTQPD ISSSPPSLLS AGGASTTTTT GRCLKHSISV  60
GGEERAPDPK PRWNPRPEQI RILEAIFNSG MVNPPRDEIP RIRMRLQQYG QVGDANVFYW  120
FQNRKSRSKN KLRSSTAGTG RLGLQGLARA PGRGAAAAPP PVEPPPLVQN QFHMLASPAQ  180
APTSSSSSSS DRSSGSSKPA AEPAMPATAA PMDLLGPLAA ACPQMYYQGS PVAPAHKVLD  240
LVASVEPVFQ PWPQGYCLSA AEVATILGGQ YMHVPVQQQP PAPLPAGALL GLCNDVTEPT  300
AVVTGHKTCA WGPAGLGQSW PCGGADHHQP GKNNNTAARE LAHEDDATKL GLLQYGFGAT  360
TAMEAAPAVA PLAASPAGGA VTMASVSAST AGLTGFPAST NGVVANYDLL QAGLAVPGGG  420
AGAGRAPAAV AVAADAAPTA AQEGVVALCI TDSITGKSVA HNVAAARLDV RAQFGEAAVL  480
LRCGGERGLD LEPVPVDASG CTVEPLQRGA FYYVLL

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G031882

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G031882_P02

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM490241	0.0	AM490241.1 Zea mays mRNA for putative wuschel homeobox protein (wox9B gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023157706.1	0.0	WUSCHEL-related homeobox 7 isoform X1
Swissprot	Q0JKK6	1e-106	WOX7_ORYSJ; WUSCHEL-related homeobox 7
TrEMBL	A8Y7W2	0.0	A8Y7W2_MAIZE; Putative wuschel homeobox protein
STRING	GRMZM2G031882_P02	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2666	34	70
Representative plant	OGRP12908	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	5e-33	homeobox-3

Link Out ? help Back to Top
Phytozome	GRMZM2G031882_P02
Entrez Gene	103651382

Publications ? help Back to Top
Nardmann J,Zimmermann R,Durantini D,Kranz E,Werr W WOX gene phylogeny in Poaceae: a comparative approach addressing leaf and embryo development. Mol. Biol. Evol., 2007. 24(11): p. 2474-84 [PMID:17768306]