PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G031882_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WOX
Protein Properties Length: 515aa    MW: 52826.7 Da    PI: 7.4995
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G031882_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.12.2e-1670130257
                        T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        ++R+++ +eq+++Le+ F++   +p ++e+ ++ ++l    ++ +++V++WFqNr+ + k+
  GRMZM2G031882_P01  70 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIPRIRMRLqqygQVGDANVFYWFQNRKSRSKN 130
                        89*****************99*************************************995 PP
2Wus_type_Homeobox109.81.5e-3569131264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +++RW+P+peQi+iLe++++sG+++P+++ei ri+++L++yG+++d+NVfyWFQNrk+R+++k
  GRMZM2G031882_P01  69 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIPRIRMRLQQYGQVGDANVFYWFQNRKSRSKNK 131
                        579**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.55E-1166132IPR009057Homeodomain-like
PROSITE profilePS500719.99366131IPR001356Homeobox domain
SMARTSM003891.5E-668135IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-669133IPR009057Homeodomain-like
CDDcd000864.11E-669131No hitNo description
PfamPF000464.8E-1470129IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MASSSFNNSH WPSMFRSKHA AEPCQTTQPD ISSSPPSLLS AGGASTTTTT GRCLKHSISV  60
GGEERAPDPK PRWNPRPEQI RILEAIFNSG MVNPPRDEIP RIRMRLQQYG QVGDANVFYW  120
FQNRKSRSKN KLRSSTAGTG RLGLQGLARA PGRGAAAAPP PVEPPPLVQN QFHMLASPAQ  180
APTSSSSSSS DRSSGSSKPA AEPAMPATAA PMDLLGPLAA ACPQMYYQGS PVAPAHKVLD  240
LVASVEPVFQ PWPQGYCLSA AEVATILGGQ YMHVPVQQQP PAPLPAGALL GLCNDVTEPT  300
AVVTGHKTCA WGPAGLGQSW PCGGADHHQP GKNNNTAARE LAHEDDATKL GLLQYGFGAT  360
TAMEAAPAVA PLAASPAGGA VTMASVSAST AGLTGFPAST NGVVANYDLL QGLAVPGGGA  420
GAGRAPAAVA VAADAAPTAA QEGVVALCIT DSITGKSVAH NVAAARLDVR AQFGEAAVLL  480
RCGGERGLDL EPVPVDASGC TVEPLQRGAF YYVLL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G031882
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G031882_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4902410.0AM490241.1 Zea mays mRNA for putative wuschel homeobox protein (wox9B gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354193.10.0uncharacterized protein LOC103651382
SwissprotQ0JKK61e-115WOX7_ORYSJ; WUSCHEL-related homeobox 7
TrEMBLA8Y7W20.0A8Y7W2_MAIZE; Putative wuschel homeobox protein
STRINGGRMZM2G031882_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.15e-33homeobox-3
Publications ? help Back to Top
  1. Nardmann J,Zimmermann R,Durantini D,Kranz E,Werr W
    WOX gene phylogeny in Poaceae: a comparative approach addressing leaf and embryo development.
    Mol. Biol. Evol., 2007. 24(11): p. 2474-84
    [PMID:17768306]