PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G031398_P02

Common Name

G9008, Zm.11914

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

Nin-like

Protein Properties

Length: 1194aa MW: 130864 Da PI: 8.0502

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G031398_P02	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85	6.9e-27	727	777	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+ sl++l+kyFs++++dAA +Lgvc+T+LKriCRq+GI+RWP+Rki+++ GRMZM2G031398_P02 727 EKNFSLDVLRKYFSGSLRDAAMSLGVCPTTLKRICRQHGISRWPSRKINKV 777 899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.052	711	797	IPR003035	RWP-RK domain
Pfam	PF02042	2.0E-24	730	777	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.23E-22	981	1069	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.8E-21	984	1066	No hit	No description
SMART	SM00666	8.9E-17	987	1069	IPR000270	PB1 domain
PROSITE profile	PS51745	22.336	987	1069	IPR000270	PB1 domain
Pfam	PF00564	1.2E-14	989	1066	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1194 aa Download sequence Send to blast
MDIGQGATIL VSAGWLYSPF SSSSPSGRRQ LRRCCWSWAK GGGTDVLPFD FPLAGRSSTS 60 DDRASRRSDL ACWARQEDGA LVRPRAHTPM GDRRTGSRHY ASARTLSVGA PSSSPSRQCG 120 GKILFSQKTV LFFISCPELN TVLQIHISLL GVDKDLCLNE WSKTMDVPTP PNRAGCNSNI 180 SNIGSPMQSF DDPFGGAAMT SFDGYSELSS PSVADHIFSL LNDPSSVQHM FALWSSSGSS 240 PRASAVREDM SFDTYPGPMD VTASLAQRIN SASVFNPTEV DRGLKDSDGL VPNNGSQQGS 300 SIIPRSVGNI LADRMLMALS LFRKSLSDGV LAQVWMPVEH NGRVVLSTSE QPYLLDQDLA 360 GYREVSRNFL FSVKEEPGLH LGLPGRVFIS GVPEWTSSVT YYSKPEYLRM EHALLHEIRG 420 SLAMPVYDPS KGSCCAVLEL VTNKEKPDFD AEMDIGVNLQ TTTDRSNQKV YSENQKYAST 480 EILDVLRAIC HAHMLPLALT WIPTSNGTAN GFCVAKNIRL DSQPGKSVLR IHESACYVND 540 AKMQGFLHAC AERHLEKGQG IAGRALKSNL PFFSPDIREY SIEDYPLAHH ARKFGLHAAV 600 AIRLRSTYTG KDDYILEFFL PVNCKGCGEQ QMLLNSLSST MQRICKSLRT VSEAETDSVS 660 ATEPMYEKTN GSCLPTGNSE SSSHDDQPIT ESAFHDLSSG DKQGDREPAK ARSSSKRVAE 720 KKRSTSEKNF SLDVLRKYFS GSLRDAAMSL GVCPTTLKRI CRQHGISRWP SRKINKVNRS 780 LKKIEKVIKS VHGVDRSLQY DPATGSLVPA TSLPDKMPTS SAGVKTVEEK SSPEPGQDFS 840 SPDGWQRESS QLHASSIPTR VGDEVQMLAI NNEGSRNYAS GIANIAQHSN SEDAHGPLYP 900 VGAVNSSRTG ETGYIDSPTS LHMDSVEGQT TVRDSRSVQQ ADVTMATKEQ TLPSTSGTTD 960 SSSGSASSQP AFKGNPGRAL KVSSSDALTV KATCNGDTVR FKFLPAMGWY HLLEEVAKRF 1020 KLATGAFQLK YKDDEDEWVI LANDADLQEC VDVLDSIGSR SVKLQILFLT NLLVVKPRCD 1080 MALPSRCSHE MLGKNQGEKV GGTSRGRHNN MWRGIGSRGV VAGWHRVEWE MHKKGMEIRR 1140 AQGRRRGQRV RVTQQEARDR DREGSRKMWV VMVKEEGIVG DECFDGLDRG IGQL

Sequence ? help Back to Top

Protein Sequence Length: 1194 aa Download sequence Send to blast

MDIGQGATIL VSAGWLYSPF SSSSPSGRRQ LRRCCWSWAK GGGTDVLPFD FPLAGRSSTS  60
DDRASRRSDL ACWARQEDGA LVRPRAHTPM GDRRTGSRHY ASARTLSVGA PSSSPSRQCG  120
GKILFSQKTV LFFISCPELN TVLQIHISLL GVDKDLCLNE WSKTMDVPTP PNRAGCNSNI  180
SNIGSPMQSF DDPFGGAAMT SFDGYSELSS PSVADHIFSL LNDPSSVQHM FALWSSSGSS  240
PRASAVREDM SFDTYPGPMD VTASLAQRIN SASVFNPTEV DRGLKDSDGL VPNNGSQQGS  300
SIIPRSVGNI LADRMLMALS LFRKSLSDGV LAQVWMPVEH NGRVVLSTSE QPYLLDQDLA  360
GYREVSRNFL FSVKEEPGLH LGLPGRVFIS GVPEWTSSVT YYSKPEYLRM EHALLHEIRG  420
SLAMPVYDPS KGSCCAVLEL VTNKEKPDFD AEMDIGVNLQ TTTDRSNQKV YSENQKYAST  480
EILDVLRAIC HAHMLPLALT WIPTSNGTAN GFCVAKNIRL DSQPGKSVLR IHESACYVND  540
AKMQGFLHAC AERHLEKGQG IAGRALKSNL PFFSPDIREY SIEDYPLAHH ARKFGLHAAV  600
AIRLRSTYTG KDDYILEFFL PVNCKGCGEQ QMLLNSLSST MQRICKSLRT VSEAETDSVS  660
ATEPMYEKTN GSCLPTGNSE SSSHDDQPIT ESAFHDLSSG DKQGDREPAK ARSSSKRVAE  720
KKRSTSEKNF SLDVLRKYFS GSLRDAAMSL GVCPTTLKRI CRQHGISRWP SRKINKVNRS  780
LKKIEKVIKS VHGVDRSLQY DPATGSLVPA TSLPDKMPTS SAGVKTVEEK SSPEPGQDFS  840
SPDGWQRESS QLHASSIPTR VGDEVQMLAI NNEGSRNYAS GIANIAQHSN SEDAHGPLYP  900
VGAVNSSRTG ETGYIDSPTS LHMDSVEGQT TVRDSRSVQQ ADVTMATKEQ TLPSTSGTTD  960
SSSGSASSQP AFKGNPGRAL KVSSSDALTV KATCNGDTVR FKFLPAMGWY HLLEEVAKRF  1020
KLATGAFQLK YKDDEDEWVI LANDADLQEC VDVLDSIGSR SVKLQILFLT NLLVVKPRCD  1080
MALPSRCSHE MLGKNQGEKV GGTSRGRHNN MWRGIGSRGV VAGWHRVEWE MHKKGMEIRR  1140
AQGRRRGQRV RVTQQEARDR DREGSRKMWV VMVKEEGIVG DECFDGLDRG IGQL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.11914	1e-156	embryo\| meristem\| ovary\| shoot

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G031398

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G031398_P02

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727756	0.0	KJ727756.1 Zea mays clone pUT5699 NLP transcription factor (NLP3) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008669225.1	0.0	protein NLP2
Swissprot	Q0JC27	0.0	NLP2_ORYSJ; Protein NLP2
TrEMBL	Q5GAU4	0.0	Q5GAU4_MAIZE; Uncharacterized protein
STRING	GRMZM2G031398_P02	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	1e-175	Nin-like family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G031398_P02

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brunner S,Fengler K,Morgante M,Tingey S,Rafalski A Evolution of DNA sequence nonhomologies among maize inbreds. Plant Cell, 2005. 17(2): p. 343-60 [PMID:15659640]