PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G031200_P02
Common NameLOC100275733, Zm.86249
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 318aa    MW: 34490.8 Da    PI: 9.3003
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G031200_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.63e-33612011128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk... 79 
                        lp+G++F+Ptd+el+ e+L+ k++ ++      +  +e+i+++d    i++++P++Lp  v+++    +fF++ +++y+tg+rk+r+++   
  GRMZM2G031200_P02  61 LPAGVKFDPTDQELL-EHLEGKARPDTrklhplV--DEFIPTIDgengICYTHPERLP-GVSKDGLVRHFFHRPSRAYTTGTRKRRKVHsgd 148
                        799************.99****999886664332..233555544445**********.555666688******************866344 PP

                NAM  80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           + +W++tgk+++vls +g+  g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  GRMZM2G031200_P02 149 dggETRWHKTGKTRPVLS-NGRPRGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 201
                        433557************.999***********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-3950220IPR003441NAC domain
PROSITE profilePS5100533.2861220IPR003441NAC domain
PfamPF023658.5E-1562201IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MTWCNGFNDV RAAVESSLSP AAAAVGKTAA ASLAVLVKMC PSCGHRAQYE QSTTIQDLPG  60
LPAGVKFDPT DQELLEHLEG KARPDTRKLH PLVDEFIPTI DGENGICYTH PERLPGVSKD  120
GLVRHFFHRP SRAYTTGTRK RRKVHSGDDG GETRWHKTGK TRPVLSNGRP RGYKKILVLY  180
TNYGKQRKPE KTNWVMHQYH LGSDEEERDG ELVVSKVFFQ THPRQCGYTM ARESAVVVPA  240
AAAVTGSSNA FIAGHHQSGG GGSVLREANG GADQLYSPGA MMGYDQEGPG NRAPPAPAVA  300
PHFMPNFVVH AARASFGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-116020114140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.862490.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G031200
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G031200_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0655440.0BT065544.2 Zea mays full-length cDNA clone ZM_BFb0229C22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001308424.10.0uncharacterized protein LOC100275733 isoform 1
SwissprotO494591e-122NAC73_ARATH; NAC domain-containing protein 73
TrEMBLK0DCV40.0K0DCV4_MAIZE; NAC87 NAC type transcription factor (Fragment)
STRINGGRMZM2G031200_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-120NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  4. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]