PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G031001_P01
Common NameZm.16169
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 433aa    MW: 47600.4 Da    PI: 6.1945
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G031001_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.82.9e-551052321129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdee++++yL++k+ ++++    vi evd++++ePwdLp ++k +ekewyfF+++d+ky+tg+r+nrat++gyWkatgkdke+
  GRMZM2G031001_P01 105 LPPGFRFHPTDEEIISHYLTHKALDHRFVS-GVIGEVDLNRIEPWDLPGRAKMGEKEWYFFCHKDRKYPTGTRTNRATETGYWKATGKDKEI 195
                        79*************************988.99***************99999*************************************** PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        ++ +g lvg+kktLvfy+grap+gekt Wvmhe+rle
  GRMZM2G031001_P01 196 FRGRGVLVGMKKTLVFYRGRAPRGEKTGWVMHEFRLE 232
                        **********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-63101255IPR003441NAC domain
PROSITE profilePS5100559.117105255IPR003441NAC domain
PfamPF023653.1E-28106231IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MPPQPLPPLL QSKPPCLLSQ LTSLFHARLS LSLSLSLSLS LSLSLSLSLS LSLLICPEAA  60
ISSSDRGEAW SGRRLLVFGT AEMSEVSVIN QAEVEDAGAG QLMDLPPGFR FHPTDEEIIS  120
HYLTHKALDH RFVSGVIGEV DLNRIEPWDL PGRAKMGEKE WYFFCHKDRK YPTGTRTNRA  180
TETGYWKATG KDKEIFRGRG VLVGMKKTLV FYRGRAPRGE KTGWVMHEFR LEGRLPQPLP  240
RSAKDEWAVC KVFNKELQAA RSEPLLAAAG AAELERVGSL GFLNELLDSA ELPALVGADV  300
DEVIDFKGPA PASVPDASYL PVKMEEHALL QMQQCQYQPP PPMFYPSQYF SLPAMNSGHL  360
PPAIRRYCKA EQQVVSAQTA SVISPSRETG LSTDPNAAGG YAEISSAATP SSSHQFLPEL  420
DDPALNLADL WKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-5210325613169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.809740.0pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G031001
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G031001_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9563950.0EU956395.1 Zea mays clone 1562064 GRAB2 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008655235.10.0NAC domain-containing protein 92
TrEMBLA0A317YG260.0A0A317YG26_MAIZE; NAC domain-containing protein 100 (Fragment)
STRINGGRMZM2G031001_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.11e-89Arabidopsis NAC domain containing protein 87