PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G030762_P02
Common NamebHLH55, LOC100502193, ZEAMMB73_454065
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 480aa    MW: 50522.5 Da    PI: 6.7887
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G030762_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.6e-09290337455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  GRMZM2G030762_P02 290 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 337
                        8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-16284355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.25E-10284341No hitNo description
PROSITE profilePS5088815.256286336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16288354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6290337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10292342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MNCGPPDQLP PGSAPSCFLN LNWDQSMAAD QLDPALSSMV SSPASNSTAA AAVTDGRALH  60
GISPQQQYGG TPLSSPPKLN LFHQTRPQFH HFPPPQVGGL PILENLMPMG HLDQFLADPG  120
FAERAARLSG FDGRPGGSGY GGVGVPGQFG IPDAGPIGAL KELELGNGRD ESSVSDPASG  180
SAEMALNKGP SDGNAKKRKA SGKGKGKDGP GSAAAGAAKE ESSGKRCRSA DESSGAEDNN  240
PTTKGKAAQS SSENGGGRKQ QGKESATKPP AEAPKDYIHV RARRGEATDS HSLAERVRRE  300
KISQRMKLLQ DLVPGCNKVV GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPQLDFNSLP  360
NLLLPKDIHQ PCGPPHFPLE TSGAPLPYLS QPHHGSPLGC CMDTQGGSMH PLDAAFCRPM  420
NPQHPFLNGA SDAASQVGTF WQDDLQSVVH MDIGQSQEIA PTSSNSYNGS LQTVHMKMEL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.175140.0cell culture| ear| meristem| ovary| pedicel| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G030762
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G030762_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0873450.0BT087345.1 Zea mays full-length cDNA clone ZM_BFb0048O23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001183599.10.0uncharacterized protein LOC100502193
TrEMBLA0A3L6DWL80.0A0A3L6DWL8_MAIZE; Transcription factor bHLH62
TrEMBLC4J9480.0C4J948_MAIZE; BHLH transcription factor
STRINGGRMZM2G030762_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.15e-58bHLH family protein