PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G030744_P02
Common NameLOC100216625
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 279aa    MW: 30456.6 Da    PI: 7.6708
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G030744_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.87e-174995455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        hn  E+rRR+riN+++  L++l+P++      K +Ka++L  A+eY+k+Lq
  GRMZM2G030744_P02 49 VHNLSEKRRRSRINEKMKALQTLIPNS-----SKTDKASMLDDAIEYLKHLQ 95
                       6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-2042105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-2043105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.9874594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.30E-174899No hitNo description
PfamPF000102.0E-144995IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-1951100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDAQQQLDLV MRHQSMATVC ESEDALGSSE SDPARPARPR GKRSRAAEVH NLSEKRRRSR  60
INEKMKALQT LIPNSSKTDK ASMLDDAIEY LKHLQLQVQM LSMRNGLYLP PGNLSGAPET  120
LAPLEMCAAL NQSGAKASNS GVVVLPGNKI PVARLLLDPP NHDQRHENPL VLQSVPSSST  180
AVEPRFLQQP AQPNLQSFQL AVPPEMIFDE ADMMLKHRLA SGRETTSLPG HEAKPGRQEA  240
CMVNSDISNR GSLGKEVFMP YLHSLQSGDT EGGLRAGSN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.813200.0ear| endosperm| leaf| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G030744
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G030744_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0333820.0BT033382.1 Zea mays full-length cDNA clone ZM_BFb0041N16 mRNA, complete cds.
GenBankBT0640560.0BT064056.1 Zea mays full-length cDNA clone ZM_BFc0135E23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001136510.10.0uncharacterized protein LOC100216625
TrEMBLA0A1D6HNP70.0A0A1D6HNP7_MAIZE; Transcription factor SPATULA
TrEMBLB4F8E40.0B4F8E4_MAIZE; BHLH transcription factor
STRINGGRMZM2G030744_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-34bHLH family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]