PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G030710_P01
Common NameLOC103630727, Zm.161066
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 736aa    MW: 80418.4 Da    PI: 7.8316
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G030710_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.41.5e-24166267199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   +
  GRMZM2G030710_P01 166 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--R 254
                        99****************************963.3445679************************************************..3 PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                         +++el+++v+r+
  GRMZM2G030710_P01 255 GDNGELRLGVRRA 267
                        489999**99986 PP
2Auxin_resp105.84.9e-35292372182
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                        +aha++tksvF+++YnPr s+seF+++++k+ k++++++s+G+Rfk+++e++d+serr++G+++g+ d+dp  W++SkW++L
  GRMZM2G030710_P01 292 VAHAVATKSVFHIYYNPRLSQSEFIIPFSKFIKSFSQPFSAGSRFKVKYESDDASERRCTGIIAGIGDADP-MWRGSKWKCL 372
                        79*********************************************************************.9********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-43158278IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.3E-41159269IPR015300DNA-binding pseudobarrel domain
CDDcd100173.98E-23164266No hitNo description
PROSITE profilePS5086313.535166268IPR003340B3 DNA binding domain
PfamPF023622.2E-22166267IPR003340B3 DNA binding domain
SMARTSM010192.5E-23166268IPR003340B3 DNA binding domain
PfamPF065073.3E-29292372IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MAGIDLNDTV EEDEEEAEPG NACSQQSRTS SAATFPPPPP NQPRPSAAVC LELWHACAGP  60
VAPLPRKGSV VVYLPQGHIE HLGDAAAAGG GAPPPVALPP HVFCRVVDVT LHADASTDEV  120
YAQLALVAEN EDVARRLRGR SEDGSAEDGD EGETVKQRFS RMPHMFCKTL TASDTSTHGG  180
FSVPRRAAED CFPPLDYSQQ RPSQELVAKD LHGTEWRFRH IYRGQPRRHL LTTGWSAFVN  240
KKKLVSGDAV LFLRGDNGEL RLGVRRAAQL KNGSAFPALY NQCLNLGSLP NVAHAVATKS  300
VFHIYYNPRL SQSEFIIPFS KFIKSFSQPF SAGSRFKVKY ESDDASERRC TGIIAGIGDA  360
DPMWRGSKWK CLMVRWDDDV DFRQPNRISP WEIELTSSVS GSHMSAPNAK RLKPCLPHVN  420
PDYLVPNGSG RPDFAESAQF HKVLQGQELL GYRTHDNAAV ATSQPCEATN MQYIDERSCS  480
NDASNIIPGV PRIGVRTPLG SPRFSYRCSG FGESPRFQKV LQGQEVFHPY RGTLVDASLS  540
NSGFHQQDGS HVPTQASKWH AQLHGCAFRG QQAPAVPSQS SSPPSVLMFQ RGDPKMSPFE  600
FGHFHVNKKE DRRAMFVHAG GIGGTEQTTM LQAHHVSGGT GNRDVTVEKS HPAVAAASDN  660
REVSKNSCKI FGISLTEKVP AMKEKGCGDI NTNYPSPFLS LKQQVPKSLG NSCATVHEQR  720
PVVARVIDVS TVDMMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1114640216361Auxin response factor 1
4ldw_A1e-1114640216361Auxin response factor 1
4ldw_B1e-1114640216361Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1610660.0ear| meristem| pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G030710
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00021PBMTransfer from AT2G33860Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G030710_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0045390.0HM004539.1 Zea mays auxin response factor 24 (ARF24) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649995.10.0auxin response factor 15
SwissprotQ8S9850.0ARFO_ORYSJ; Auxin response factor 15
TrEMBLA0A1D6MCU10.0A0A1D6MCU1_MAIZE; Auxin response factor
STRINGGRMZM2G030710_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Representative plantOGRP66851018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-151ARF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]