PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G030458_P01
Common NameLOC100278142, ZEAMMB73_609637
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GeBP
Protein Properties Length: 375aa    MW: 40091.9 Da    PI: 6.078
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G030458_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573101.95.4e-3266165297
             DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkif 89 
                        lfqrlw++eDeiv+L+++ +f+a++g+   +++ d++ fye ++++++  ++k+ql eKirrLK+K++++v++ +  g+ ++f+++h+q if
  GRMZM2G030458_P01  66 LFQRLWTDEDEIVILRAFAEFTAQRGTsfASHQyDTTPFYEDMRRRLNTGFTKNQLAEKIRRLKRKYRNCVERlRVAGSGFTFRSPHEQAIF 157
                        79*************************8867778***************************************88899************** PP

             DUF573  90 elskkiWg 97 
                        e+++ iW+
  GRMZM2G030458_P01 158 EIARTIWR 165
                        *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.7E-3067164IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MFPTVDEPSA AGAMVSSSFP DADAYGNGDS DGLDFPVDPN PNPVFSSPAA AAAPGSAGAA  60
GERRQLFQRL WTDEDEIVIL RAFAEFTAQR GTSFASHQYD TTPFYEDMRR RLNTGFTKNQ  120
LAEKIRRLKR KYRNCVERLR VAGSGFTFRS PHEQAIFEIA RTIWRPASDK HGRDSDDEGG  180
GGNVHDATFA PFAIDAAANG ESAKSSRPRR GRRRRTGDFP ADAVALPPAP MPMQVMTEDA  240
LPSFPQATAA AVMNGGCGLI VDPASGLPTA LSSAAAAATA VSGGSTTENP ILTALFKEMV  300
RAMLSVVGSG GGTTALQGLE PPPPIAGVPM EGEKWRQQRI RELEVYLRRM DLLQDQARAA  360
LEELRSAPHA GGMNT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1000980.0endosperm| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G030458
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G030458_P01
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0645990.0BT064599.1 Zea mays full-length cDNA clone ZM_BFc0188M08 mRNA, complete cds.
GenBankEU9721160.0EU972116.1 Zea mays clone 375368 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001144987.10.0uncharacterized protein LOC100278142
TrEMBLA0A3L6DAS10.0A0A3L6DAS1_MAIZE; Putative transcription factor
TrEMBLB6U4F10.0B6U4F1_MAIZE; Putative transcription factor
STRINGGRMZM2G030458_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Representative plantOGRP31841028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.23e-32DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]