PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G030280_P02 | ||||||||
Common Name | bZIP72, LOC100193779, ZEAMMB73_273664 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 329aa MW: 36575 Da PI: 8.9771 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.4 | 2e-10 | 45 | 85 | 5 | 45 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L GRMZM2G030280_P02 45 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 85 788*************************9877777766555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.1E-8 | 35 | 88 | No hit | No description |
SMART | SM00338 | 2.4E-8 | 41 | 104 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.438 | 43 | 87 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.94E-7 | 45 | 88 | No hit | No description |
Pfam | PF00170 | 5.5E-7 | 45 | 85 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 48 | 63 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 6.8E-34 | 127 | 202 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MADASPRTET STDDTDDNNG LEPGRGGLVA SDSSDRSKDK HGDQKTLRRL AQNREAARKS 60 RLRKKAYVQQ LENSRLKLTQ LEQELQRARQ QGIFISSSVD QSHSMSGNGA LAFDMEYARW 120 LEEHNRQISE LRAGVSAHAS DTDLRSVVDK IMSHYDEIFR LKGNAAKADV FHVLSGMWKT 180 PAERCFLWLG GFRPSEVLKL LSTQLEPLTE QQLSGISNLQ QSSQQAEDAL SQGMEALQQS 240 LAETLAGSLS SSGSTGNVAN YMGQMAMAMG KLGTLENFLR QADNLRLQTL QQMQRILTTR 300 QSARALLVIS DYSSRLRALS SLWLARPKE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.28677 | 0.0 | cell culture| meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G030280 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G030280_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036137 | 0.0 | BT036137.1 Zea mays full-length cDNA clone ZM_BFb0097M11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001132337.1 | 0.0 | uncharacterized protein LOC100193779 | ||||
Swissprot | P23923 | 0.0 | HBP1B_WHEAT; Transcription factor HBP-1b(c38) | ||||
TrEMBL | B4FG99 | 0.0 | B4FG99_MAIZE; BZIP transcription factor | ||||
STRING | GRMZM2G030280_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP486 | 38 | 185 | Representative plant | OGRP722 | 16 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12250.2 | 1e-148 | TGACG motif-binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G030280_P02 |
Entrez Gene | 100193779 |
Publications ? help Back to Top | |||
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