PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G029979_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 475aa MW: 51260.3 Da PI: 8.7832 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35 | 3.1e-11 | 171 | 201 | 3 | 33 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee 33 + k rr+++NReAAr+sR+RKka+i++Le+ GRMZM2G029979_P01 171 DAKTLRRLAQNREAARKSRLRKKAYIQNLET 201 67999************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 9.4E-9 | 163 | 221 | No hit | No description |
SMART | SM00338 | 1.4E-5 | 169 | 251 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.9E-8 | 172 | 201 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.69E-7 | 173 | 210 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 176 | 191 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 3.0E-27 | 238 | 322 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 475 aa Download sequence Send to blast |
MGDRTWQQPH AQASSPDAGT KVQASSSSVH GNIIRKEPAG GGGYDDMAEF DQALFLYLNS 60 SQDQASVIQD QPQTLNIFPS EPMHVVEPAA PKESMGATTN NTAWNNAGAG PSKQPPSNLP 120 SRTTATPAGP RKDGSKPPAA VKREGSSSGG AMGSGTPSTS NQQEGPTRTS DAKTLRRLAQ 180 NREAARKSRL RKKAYIQNLE TSRVRLAHLE QEVHRSRTQA AWFDMEHARW QEEHGKVMRH 240 LRAALEAEYA ATATTPAAAA ADAQLRQLVD AAAAHHGALA ELKAVAASAD AFHLVSGAWV 300 SAAERCFLWI GGFRPSELIK IAARHAEPLT EQQAMSVCGV QQWARDAEAA LDHELQAMHS 360 SVSEAISSDA AALLYPYSDV PGFMATMSLA ISKLASLEAF VRQADALRLQ TLHRLPQILT 420 ARQSARCFLA IADYSHRLRA LSELWHTRQG HERAASTQAA RPSQTPPYQS RDGLL |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.103850 | 0.0 | meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G029979 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G029979_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU951316 | 1e-121 | EU951316.1 Zea mays clone 695528 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008645440.1 | 0.0 | transcription factor TGAL9 isoform X3 | ||||
TrEMBL | A0A3L6ESM0 | 0.0 | A0A3L6ESM0_MAIZE; BZIP transcription factor TGA10 | ||||
STRING | GRMZM2G029979_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2732 | 36 | 69 | Representative plant | OGRP14452 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06839.3 | 1e-85 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G029979_P01 |