PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G029850_P02
Common NameMYBR52, Zm.1706
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 441aa    MW: 46775.4 Da    PI: 9.3609
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G029850_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.87.6e-164185147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       r +WT++E+ ++++a +++G   W+ I +++g ++t+ q++s+ qk+
  GRMZM2G029850_P02 41 REKWTEDEHRRFLEALQMHGRA-WRHIQEHIG-TKTAVQIRSHAQKF 85
                       789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.38E-153589IPR009057Homeodomain-like
PROSITE profilePS5129419.4753690IPR017930Myb domain
TIGRFAMsTIGR015572.4E-153988IPR006447Myb domain, plants
SMARTSM007172.1E-124088IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-94181IPR009057Homeodomain-like
PfamPF002496.9E-144184IPR001005SANT/Myb domain
CDDcd001671.40E-94386No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MATGETAVDR CKDPLGPRDM DLSGEEHVPK ARKPYTITKQ REKWTEDEHR RFLEALQMHG  60
RAWRHIQEHI GTKTAVQIRS HAQKFFTKVV RESSSGSNAS AGAAPAIQVP PPRPKRKPAH  120
PYPRKVDGAA KKPAPELKLM EKLPPRDRDE GSPTSVLASA RTASRAEVLL GSAFANSSSA  180
SRSRGLSASG SDERGDGGGS LVSSVAGEHG CASPRTRAPY TKVLVEANEV SDLGPEAPVL  240
KLFGKKVVVK DLKTDYSPAA ASVAKASRDR NPIGAAGASS WSPWPGSVQV QQLMYFVPQH  300
DGLAAQPVAP WFGYSGSVPC AVFYPQAVAS AQEHQQASEP LDHKRAQTER SLTGSNMASS  360
AASAAQNSDT AQSHHGPGQE NTGDGCAALR AAIPRLAKCA SSASCSGRGF VPYKRCAAES  420
EAPRPVAPGE EDDGELTRLC L
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G029850
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G029850_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0623610.0BT062361.1 Zea mays full-length cDNA clone ZM_BFb0286F19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001144028.10.0uncharacterized protein LOC100276850
TrEMBLC0HJ550.0C0HJ55_MAIZE; MYB-related transcription factor
STRINGGRMZM2G029850_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Representative plantOGRP12551549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.32e-33MYB_related family protein