PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G029323_P01
Common NameLOC100502435, ZEAMMB73_614246
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 316aa    MW: 33955.9 Da    PI: 7.1942
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G029323_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.6e-20147196255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+ +l+g
  GRMZM2G029323_P01 147 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEGAALAYDEAAFRLRG 196
                        59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.78E-33146204No hitNo description
Gene3DG3DSA:3.30.730.102.8E-32147205IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-22147204IPR016177DNA-binding domain
PROSITE profilePS5103223.209147204IPR001471AP2/ERF domain
SMARTSM003801.9E-37147210IPR001471AP2/ERF domain
PfamPF008479.4E-14148196IPR001471AP2/ERF domain
PRINTSPR003671.5E-10148159IPR001471AP2/ERF domain
PRINTSPR003671.5E-10170186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020127anatomyprimary root
PO:0007015developmental stageradicle emergence stage
PO:0007106developmental stageLP.03 three leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAAAIDMYKY CNTSAHLIAS SSPSDQELAK ALEPFITSAS SPYHRYSLAP DSYMPTPSSY  60
TTSPLPTPTS SPFSQLPPLY SSPYAASTAS GVAGPMGLNQ LGPAQIQQIQ AQLMFQHQQQ  120
RGLHAAFLGP RAQPMKQSGS PPAQSKLYRG VRQRHWGKWV AEIRLPKNRT RLWLGTFDTA  180
EGAALAYDEA AFRLRGDTAR LNFPSLRRGG GARLAGPLHA SVDAKLTAIC QSLAGSKNSS  240
SSDESAASLP DSPKCSASTE GDEDSASAGS PPSPTQAPPV PEMAKLDFTE APWDETEAFH  300
LRKYPSWEID WDSILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20143204163ATERF1
3gcc_A2e-20143204163ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.210280.0endosperm| meristem| ovary| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G029323
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G029323_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0881630.0BT088163.1 Zea mays full-length cDNA clone ZM_BFc0039L03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001183842.10.0putative AP2/EREBP transcription factor superfamily protein
TrEMBLC4JBG60.0C4JBG6_MAIZE; Ethylene-responsive transcription factor ERF056
TrEMBLK4JFI70.0K4JFI7_MAIZE; AP2-EREBP-type transcription factor (Fragment)
STRINGGRMZM2G029323_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.13e-39ERF family protein