PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G028980_P01
Common NameARF16, ZEAMMB73_859793
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 914aa    MW: 100943 Da    PI: 6.0266
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G028980_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.75.2e-24134235199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g+ W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   
  GRMZM2G028980_P01 134 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfnQQPPA--QELIAKDLHGNDWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI-- 221
                        99*****************************8444443..48************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  GRMZM2G028980_P01 222 WNDNNQLLLGIRRA 235
                        7777778***9997 PP
2Auxin_resp119.33.1e-39260343183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaast+s F+++YnPras+ eFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  GRMZM2G028980_P01 260 AAHAASTNSRFTIFYNPRASPCEFVIPMAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 343
                        79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-48119263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-42126249IPR015300DNA-binding pseudobarrel domain
CDDcd100171.80E-21133234No hitNo description
PROSITE profilePS5086313.211134236IPR003340B3 DNA binding domain
PfamPF023622.0E-22134235IPR003340B3 DNA binding domain
SMARTSM010193.7E-24134236IPR003340B3 DNA binding domain
PfamPF065075.5E-34260343IPR010525Auxin response factor
PfamPF023093.0E-8773866IPR033389AUX/IAA domain
SuperFamilySSF542773.99E-8774858No hitNo description
PROSITE profilePS5174525.419782866IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 914 aa     Download sequence    Send to blast
MKLSPSASGG LQDQPASPEE AEEHKCLNSE LWHACAGPLV SLPSVGSRVV YFPQGHGEQV  60
AASTNKEMEA QIPNYPSLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPFLP  120
AELGTASNQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFNQQPP AQELIAKDLH  180
GNDWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT  240
VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP CEFVIPMAKY VKAVYHTRIS  300
VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWPNSHWR SVKVGWDEST AGEKQPRVSL  360
WEIEPLTTFP MYPSPFALGL KRPWPAGLPS LYGGRGDGLT SSLMWLRDRA NPGFQSLNFS  420
GLGMSPWMQP RLDNSLLGLQ SDMYQTIAAA AALQSTTKQV PPSAMQFQQP QNIADRSALL  480
SSQILQQVQP RFQQIYPQNL NENKIQGHTQ PEYLQVQQQL QRCQSFNEQK PPMHPQQQQQ  540
EPQQQQCVQT PQDQQMQEQK HLHNFHSLPD ALSAFSQLSP ATHSPPSALQ TVPAFSHQQN  600
FPDTNISSLS PSTGPSMHGM LGRLPSEAAS SLPCVAMNAP VSVSDPWSSK RVAVESVNPC  660
RPHVSPHIEH LDMATCNMPQ SSALAPLPGR ECLVDEDGCS DPQNHLLFGV HIDSHSLLMQ  720
GGIPALQNDN SSGTIPYSTS NFLSPSENDF PLNQPLRSAG CLDESDYLPC AENAEQANQQ  780
FATFVKVYKS GTVGRLLDIT RFSSYDELRS EVGRLFGLEG QLEDPLRSGW QLVFVDREDD  840
VLLVGDDPWQ EFVNSVSCIK ILSPEEVQRM GKPGIQLLSS APSRRLGNGC DSYASMQEPR  900
GLDAGMAPVG SVEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1592736451388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.46460.0ear| meristem| ovary| silk| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G028980
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G028980_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277400.0KJ727740.1 Zea mays clone pUT5681 ARF transcription factor (ARF16) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001333732.10.0auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A3L6EZW90.0A0A3L6EZW9_MAIZE; Auxin response factor
TrEMBLK7URZ70.0K7URZ7_MAIZE; Auxin response factor
STRINGGRMZM2G028980_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Representative plantOGRP8561456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]