PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G028794_P01
Common NameZEAMMB73_461993
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 239aa    MW: 27227.3 Da    PI: 9.0629
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G028794_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.91.2e-15139229199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+k++++s+v +  +l lp +f+++++ k  ++  +tl de+ ++++ k+    ++++  l++GW +F+  +g+++gD+ vF+l++ ++f  
  GRMZM2G028794_P01 139 FVKAMLHSHVVRGFWLQLPSHFCDTYMPK--QDSIITLVDEKDEEFDTKY--LAYKKG--LSGGWAGFALCHGMQDGDSAVFQLIKPTTF-- 222
                        89************************744..5669***************..555555..9***********************986666.. PP

                        EEEEE-S CS
                 B3  93 vvkvfrk 99 
                        +v ++r+
  GRMZM2G028794_P01 223 KVYIIRA 229
                        8888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-18131229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-22132229IPR015300DNA-binding pseudobarrel domain
CDDcd100178.98E-24137228No hitNo description
SMARTSM010193.3E-16139230IPR003340B3 DNA binding domain
PfamPF023627.5E-14139229IPR003340B3 DNA binding domain
PROSITE profilePS5086311.533139230IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MVAAAAETQW MSPYEVARER NVEENKRKME ALNLRHLSAV IKEAPKTPSP MKPKRRRPIE  60
DAVVVPSPPR RSRRLANLPE LKYAEIAPHT ADRMTRSPRK PACRIYFANR GSISMKARLE  120
ATRKAEELES ELDHEIPSFV KAMLHSHVVR GFWLQLPSHF CDTYMPKQDS IITLVDEKDE  180
EFDTKYLAYK KGLSGGWAGF ALCHGMQDGD SAVFQLIKPT TFKVYIIRAA SDDVSEVDE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.183751e-161cell lignification| ear| embryo| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G028794
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G028794_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0873000.0BT087300.1 Zea mays full-length cDNA clone ZM_BFb0032O11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020400067.11e-179B3 domain-containing protein Os03g0184500
SwissprotQ10QS91e-128Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBLK7VPP21e-177K7VPP2_MAIZE; B3 domain-containing protein
STRINGGRMZM2G028794_P011e-178(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-51B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]