PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G028766_P02
Common NameLOC100274362, ZEAMMB73_682270
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 416aa    MW: 47042.3 Da    PI: 5.3981
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G028766_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000114367123
                       EEETTTTEEESSHHHHHHHHHH..T CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirt..H 23
                       ++C+dCgk+++++ +   H ++  H
  GRMZM2G028766_P02 43 FVCSDCGKPCRSQTEVDLHTKRtgH 67
                       89***************99998666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280830IPR007087Zinc finger, C2H2
PROSITE patternPS0002804567IPR007087Zinc finger, C2H2
Gene3DG3DSA:1.10.8.101.4E-898160No hitNo description
SuperFamilySSF469341.37E-14103168IPR009060UBA-like
PROSITE profilePS5003010.354114155IPR015940Ubiquitin-associated domain
SMARTSM001650.0085116154IPR015940Ubiquitin-associated domain
PfamPF006271.3E-4116152IPR015940Ubiquitin-associated domain
SuperFamilySSF1435033.92E-26306412IPR018997PUB domain
CDDcd104611.55E-62310416No hitNo description
PfamPF094096.4E-22323394IPR018997PUB domain
SMARTSM005805.2E-22326389IPR018997PUB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MAGLSLLCGD CGAQLRSVEE AQAHAEATNH ANFVESTEAV LNFVCSDCGK PCRSQTEVDL  60
HTKRTGHTEF ADKTAEAAKP IDLEAPLKPA SEDVMDVDTS ASASGEPQEM VVPEVNKEML  120
TDLEGMGFST ARATRVLHFS GNSTIEGAIN WLSEHQEDID IDEMPLVPAN SKTEDNKPSL  180
TPEEMKIKAQ ELRDRARKKK EEEERRMERE REKERIRIGK ELLEAKRIEE QNERKRMIEL  240
RKLEKEEEKR AREKIRQKLE EDKAERRRKL GLPPEDPAAA KPSAPLPVEE KKSALPVRPA  300
TKAERMRDCL RNLKQQNKDD DAKVKRAFQT LLTYIGNVAK NPDEEKFRKI RLTNATFQER  360
VGNLHVGIEF LELCGFEKLE GNEYLFLARE KVDKAILNTA GAELNSAITN PFFGVL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.938580.0ear| embryo| endosperm| meristem| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G028766
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G028766_P02
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0428560.0BT042856.1 Zea mays full-length cDNA clone ZM_BFc0051P17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142194.10.0uncharacterized protein LOC100274362
TrEMBLB4G0G80.0B4G0G8_MAIZE; Ubiquitin-associated (UBA)/TS-N domain-containing protein
STRINGGRMZM2G028766_P010.0(Zea mays)