PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G028766_P01
Common NameLOC100274362, ZEAMMB73_682270
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 416aa    MW: 47042.3 Da    PI: 5.3981
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G028766_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000114367123
                       EEETTTTEEESSHHHHHHHHHH..T CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirt..H 23
                       ++C+dCgk+++++ +   H ++  H
  GRMZM2G028766_P01 43 FVCSDCGKPCRSQTEVDLHTKRtgH 67
                       89***************99998666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280830IPR007087Zinc finger, C2H2
PROSITE patternPS0002804567IPR007087Zinc finger, C2H2
Gene3DG3DSA:1.10.8.101.4E-898160No hitNo description
SuperFamilySSF469341.37E-14103168IPR009060UBA-like
PROSITE profilePS5003010.354114155IPR015940Ubiquitin-associated domain
SMARTSM001650.0085116154IPR015940Ubiquitin-associated domain
PfamPF006271.3E-4116152IPR015940Ubiquitin-associated domain
SuperFamilySSF1435033.92E-26306412IPR018997PUB domain
CDDcd104611.55E-62310416No hitNo description
PfamPF094096.4E-22323394IPR018997PUB domain
SMARTSM005805.2E-22326389IPR018997PUB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MAGLSLLCGD CGAQLRSVEE AQAHAEATNH ANFVESTEAV LNFVCSDCGK PCRSQTEVDL  60
HTKRTGHTEF ADKTAEAAKP IDLEAPLKPA SEDVMDVDTS ASASGEPQEM VVPEVNKEML  120
TDLEGMGFST ARATRVLHFS GNSTIEGAIN WLSEHQEDID IDEMPLVPAN SKTEDNKPSL  180
TPEEMKIKAQ ELRDRARKKK EEEERRMERE REKERIRIGK ELLEAKRIEE QNERKRMIEL  240
RKLEKEEEKR AREKIRQKLE EDKAERRRKL GLPPEDPAAA KPSAPLPVEE KKSALPVRPA  300
TKAERMRDCL RNLKQQNKDD DAKVKRAFQT LLTYIGNVAK NPDEEKFRKI RLTNATFQER  360
VGNLHVGIEF LELCGFEKLE GNEYLFLARE KVDKAILNTA GAELNSAITN PFFGVL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.938580.0ear| embryo| endosperm| meristem| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G028766
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G028766_P01
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0428560.0BT042856.1 Zea mays full-length cDNA clone ZM_BFc0051P17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142194.10.0uncharacterized protein LOC100274362
TrEMBLB4G0G80.0B4G0G8_MAIZE; Ubiquitin-associated (UBA)/TS-N domain-containing protein
STRINGGRMZM2G028766_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84641517
Representative plantOGRP277333