PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G028594_P03
Common NameLOC100193074, ZEAMMB73_208947
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family DBB
Protein Properties Length: 435aa    MW: 46942.6 Da    PI: 5.1387
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G028594_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.35.4e-07447542
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                        C+ ++  e++  C  ++  lC  C +e H        H++vpl
  GRMZM2G028594_P03  4 QCNACGAAEARVLCCADEAALCVACDEEVHAAnklagkHQRVPL 47
                       7******99*********************66899999999986 PP
2zf-B_box19.61.9e-061201391635
           zf-B_box  16 lfCedCqqllCedClleeHk 35 
                        +fC +++ llC+dC +++H 
  GRMZM2G028594_P03 120 FFCLEDRALLCRDCDVAIHT 139
                        9*****************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.708147IPR000315B-box-type zinc finger
CDDcd000212.88E-9347No hitNo description
SMARTSM003368.4E-10447IPR000315B-box-type zinc finger
PfamPF006432.5E-5447IPR000315B-box-type zinc finger
SMARTSM003361.6E-5115152IPR000315B-box-type zinc finger
CDDcd000212.09E-5120152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MKIQCNACGA AEARVLCCAD EAALCVACDE EVHAANKLAG KHQRVPLLTD AAAAAAAAAP  60
AVPKCDICQL VWCRSRGEGA YELYLDVANR LQGLMRLAQG ANKQQPYPEL LSLFEASGYF  120
FCLEDRALLC RDCDVAIHTV NSFVSVHQRF LLTGVQVGLD PADPVPPIAE KHVNAVGGSV  180
NQPVRHQPRR SPTVQFSVEG SASVPTKNVT NGDCSRQNFV PTARAEVVDW TMNNSTIRSV  240
ESPPKYISEE SPTLLQSSQT TTVFSNQING NSDGAYHLSF SGGNVTDSLP DWPVDEFFSN  300
SEYGPNFGFS ENGSSKAKLE SDILSGIYMK KGDTAKLGGA GGSPQCRLAE GSVAEELLGQ  360
VPGLITDEYM GRVPENSWTV PEVPSPPTAS GLNWHGNLCF PAYDSTMFVP EITSLQNSQS  420
HFTVPSSFKR RRREY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.814360.0aerial organ| endosperm| glume| meristem| ovary| pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G028594
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G028594_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0352330.0BT035233.1 Zea mays full-length cDNA clone ZM_BFb0047A02 mRNA, complete cds.
GenBankKJ7285310.0KJ728531.1 Zea mays clone pUT6836 orphans transcription factor (Orphan243) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131712.10.0uncharacterized protein LOC100193074
TrEMBLA0A1D6NVA10.0A0A1D6NVA1_MAIZE; Profilin homolog5
STRINGGRMZM2G028594_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Representative plantOGRP18041634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.17e-48light-regulated zinc finger protein 1