PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G028492_P01
Common NameZEAMMB73_026418, Zm.34032
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 458aa    MW: 49964 Da    PI: 7.17
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G028492_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.31.9e-06410433326
                        S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                        t++C +f     C+ G++C+F H+
  GRMZM2G028492_P01 410 TRPCAYFNSARGCRNGANCTFLHD 433
                        89*********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.516407435IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-5409436IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-6410435IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-5410433IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MGPRRSKRVS WATGANLCKV RFFISEDSPS QAGLRPQDNL QAKGSWLMHA AGPSSDDSLP  60
PGFESLQPTS CLKIDISQIH VIRWRCPPKV LHNPVWLVAA GEESEEVALQ NDRIFGALEA  120
IYPRPSNIPP NPFVTPDVKD SQYDDSRTQL VPLLPVEEDD ASDQLEEPPV GLSSSYQQSD  180
KYDSATFRVP QASDAPFTTA QQQQPNGSIN TTRSGAPVEP DTVAAASAAY TAIIQSNRMG  240
NMIDKDLLVE MLSDPAQLER LMKEYGALKH EQSTNSSVAP MVQGPPPQMT ASVPVSFPDH  300
TTTFHNINST LPPPPVLNRL PPPAIPSAVT INPPASSSQA ISFPTGRTSG LNYYQTLIHQ  360
HGGERQEPQP LQQHGMHFPM HHRTVASQSS ATDIVSSGTM PARDTKQRPT RPCAYFNSAR  420
GCRNGANCTF LHDVSAARKE QPKGSKRIKL DSRIAGRY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.340320.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G028492
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G028492_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0606000.0BT060600.1 Zea mays full-length cDNA clone ZM_BFb0021F18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152208.10.0zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ7XM161e-168C3H30_ORYSJ; Zinc finger CCCH domain-containing protein 30
TrEMBLC0HE440.0C0HE44_MAIZE; Zinc finger CCCH domain-containing protein 6
STRINGGRMZM2G028492_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86801013
Representative plantOGRP212968
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]