PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G028438_P01 | ||||||||
Common Name | GRAS76, ZEAMMB73_414510, Zm.43192 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 607aa MW: 63032.1 Da PI: 8.5031 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 298.1 | 2.3e-91 | 237 | 607 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPi 90 ++lL e+A av++g++++a a La l++ a+p+gd+ qRl+a+++ AL++r+ r + + ++ +e+ a +l+++vsP+ GRMZM2G028438_P01 237 RQLLSEAAAAVADGNHAAAAAHLAVLKTAANPRGDAEQRLVAMMAGALSSRIRR--PPAS----HQHL---AglcGAEQRAEWQLLQHVSPC 319 689***************************************************..2222....2222...1234777888889******** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfef 178 + ++ aN aIl+av+ ++++H iDfd+s +Q aL+++LasR+ l++T+v +p+s +++l +tg+rL++ A++ gv+f+f GRMZM2G028438_P01 320 FGLALHGANLAILDAVADQRAIHLIDFDVSV-AQHTALIDSLASRRVAGTCLKVTAVTDPTSPftpaLAQALAATGQRLKEHARQAGVEFRF 410 *****************************96.7**************************9988899999*********************** PP GRAS 179 nvlvak.rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 +++ + + + ++L +++ gEal+Vnl+++l r++desvs +++rd++L+ v++l+P+vv++veqe+ n++++++rf++a+ +y a++ GRMZM2G028438_P01 411 RAVSCVaGEVEASRSRLGCDEtGEALVVNLAFALSRVPDESVSPANPRDALLRGVRGLRPRVVTLVEQELGANTAPLAARFADACAHYGAVL 502 **94441333457999****99********************************************************************** PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360 +sl+a+l+r+s +r+ E++ l+ ++ n+va eg +r+er+e ++kWr+r+++aG++pv++++ +a+ +k l + g+ v+ +sg l + GRMZM2G028438_P01 503 ESLDATLGRDSAQRARAEAA-LASKAANAVAREGPDRVERCEVFGKWRARFGMAGLRPVAIGQGVADRVKGRLGPAARPGFDVKLDSGRLAI 593 *******************9.9999******************************************************************* PP GRAS 361 gWkdrpLvsvSaWr 374 gW++r ++++SaWr GRMZM2G028438_P01 594 GWMGRVVTVASAWR 607 *************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 43.368 | 210 | 587 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.0E-89 | 237 | 607 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 607 aa Download sequence Send to blast |
MEPAGAPWCD PGRGYGAGSA AEAPTLKGQQ PQQLLLTPPR QDGAALKRSL GDVERWQQAL 60 YLRAVRQRVA VAAQSQMAHP PTDVGPVLAG ATASPASYGF SRPPSSPFAG LSPQPSSTLS 120 SLTTASHVET PPLLQRHTVA ARELVLLQEL EKHLLDDGDG EAEATGSACG STVTSSAWGD 180 TIQELNSLTA APLASLPNNY SNTVPAMSRS PPSNSSSSTA SSAASSSPAA STTASSRQLL 240 SEAAAAVADG NHAAAAAHLA VLKTAANPRG DAEQRLVAMM AGALSSRIRR PPASHQHLAG 300 LCGAEQRAEW QLLQHVSPCF GLALHGANLA ILDAVADQRA IHLIDFDVSV AQHTALIDSL 360 ASRRVAGTCL KVTAVTDPTS PFTPALAQAL AATGQRLKEH ARQAGVEFRF RAVSCVAGEV 420 EASRSRLGCD ETGEALVVNL AFALSRVPDE SVSPANPRDA LLRGVRGLRP RVVTLVEQEL 480 GANTAPLAAR FADACAHYGA VLESLDATLG RDSAQRARAE AALASKAANA VAREGPDRVE 540 RCEVFGKWRA RFGMAGLRPV AIGQGVADRV KGRLGPAARP GFDVKLDSGR LAIGWMGRVV 600 TVASAWR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-30 | 237 | 607 | 6 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G028438 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G028438_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU957074 | 0.0 | EU957074.1 Zea mays clone 1581966 chitin-inducible gibberellin-responsive protein 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147939.1 | 0.0 | uncharacterized LOC100281548 | ||||
TrEMBL | B6SWF9 | 0.0 | B6SWF9_MAIZE; Chitin-inducible gibberellin-responsive protein 2 | ||||
STRING | GRMZM2G028438_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4188 | 34 | 74 | Representative plant | OGRP7599 | 9 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52510.1 | 5e-62 | SCARECROW-like 8 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G028438_P01 |
Entrez Gene | 100281548 |
Publications ? help Back to Top | |||
---|---|---|---|
|