PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G028151_P02 | ||||||||
Common Name | LOC100217129 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 260aa MW: 27553.9 Da PI: 9.7182 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.7 | 9e-16 | 25 | 76 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I +s +k +lg+f t eeAa+a++ a+ k++g GRMZM2G028151_P02 25 SIYRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 76 57****************999754...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.48E-18 | 25 | 85 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.45E-25 | 25 | 86 | No hit | No description |
Pfam | PF00847 | 4.6E-11 | 25 | 76 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.0E-19 | 26 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-34 | 26 | 90 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 26 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-5 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-5 | 66 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MKNMTRQEYV AHLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVSGNK DLYLGTFSTQ 60 EEAAEAYDVA AIKFRGLSAV TNFDITRYDV DKIMESSTLL PGEQVRRRKE GADAAVSEAA 120 AALVQAGNCM TDTWKIQAAL PAAARADERG AGQQQRQDLL SSEAFSLLHD IVSVDAAAGT 180 GTGGMSNASS SLAPSVSNSR EQSPDRGGAS LAMLFAKPAA APKLACPLPL GSWVSPSAVS 240 ARPPGVSIAH LPVFAAWTDA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.32198 | 0.0 | meristem| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G028151 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed at the base of the stem. Expressed in stems. Expressed a low levels in crown roots and seeds (PubMed:21807632). Expressed in the stem region where adventitious (crown) root initiation occurs (PubMed:21481033). {ECO:0000269|PubMed:21481033, ECO:0000269|PubMed:21807632}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G028151_P02 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT037983 | 0.0 | BT037983.1 Zea mays full-length cDNA clone ZM_BFb0205J05 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001346556.1 | 0.0 | uncharacterized protein LOC100217129 | ||||
Refseq | XP_008665715.1 | 0.0 | putative AP2/EREBP transcription factor superfamily protein isoform X2 | ||||
Swissprot | Q84Z02 | 9e-99 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | B4FLJ5 | 0.0 | B4FLJ5_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G028151_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-63 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G028151_P02 |
Entrez Gene | 100217129 |
Publications ? help Back to Top | |||
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