PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G028054_P03 | ||||||||
Common Name | LOC100857038, ZEAMMB73_650135 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB | ||||||||
Protein Properties | Length: 492aa MW: 53621.9 Da PI: 6.2605 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.7 | 3.6e-15 | 49 | 96 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l+d+vk++G g+W+++ + + R++k+c++rw ++l GRMZM2G028054_P03 49 KGPWTDAEDAILIDYVKKHGVGNWNAVRKNTELLRCGKSCRLRWANHL 96 79******************************99**********9986 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.9e-16 | 102 | 145 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + ++T+eE+ l+++++++lG++ W++ a +++ gRt++++k++w++ GRMZM2G028054_P03 102 KEAFTPEEERLIIQLHAKLGNK-WSRMAIHLP-GRTDNEIKNYWNT 145 578*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.648 | 44 | 96 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.11E-30 | 46 | 143 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-14 | 48 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 49 | 96 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-23 | 50 | 103 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.57E-11 | 51 | 96 | No hit | No description |
PROSITE profile | PS51294 | 24.303 | 97 | 151 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-16 | 101 | 149 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-15 | 102 | 145 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.19E-13 | 104 | 147 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.4E-24 | 104 | 149 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MYRVKSQAEG EGEGKDEMMS QDQMDSPVDN DVSSSRRSPR RGVGAPLKKG PWTDAEDAIL 60 IDYVKKHGVG NWNAVRKNTE LLRCGKSCRL RWANHLRPNL KKEAFTPEEE RLIIQLHAKL 120 GNKWSRMAIH LPGRTDNEIK NYWNTRKKRC ERASLPIYPA GVRNQSSNED QQLSGDLNGG 180 ENMSNDLLSG NSLCLPDFNN DSFRAKLKAL PPQLPAVSIS NLLGQSFASK GCSFMDQVDQ 240 AGMLKQSGSA LPTLSDAIDD VISSVDQFSN DSEKLMQTLG FGYLNEANAT SKSIAPFGVA 300 LTGSHAPLNG IFSASRLTNG PSKMEPPSVQ NSRLKYTVDP AMQPTELVDP YMQSLSATPS 360 VKSECASPRN SGLFEELLHE PHALRSGKSQ QPSVRSSSSS AGTPYGTMVS SEFDMGQEYW 420 EEQPGSLLSE YAHFSGNYLA ECAPPVSAAS TDIFPLPKIS PAESPSMGSG EQALEPKHES 480 AASRTSSWKL EA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-29 | 44 | 149 | 1 | 106 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.36790 | 0.0 | aleurone |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G028054 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G028054_P03 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038569 | 0.0 | BT038569.1 Zea mays full-length cDNA clone ZM_BFb0287F20 mRNA, complete cds. | |||
GenBank | BT065979 | 0.0 | BT065979.1 Zea mays full-length cDNA clone ZM_BFb0129D18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001241838.2 | 0.0 | transcription factor GAMYB | ||||
Refseq | XP_020397769.1 | 0.0 | transcription factor GAMYB isoform X1 | ||||
Refseq | XP_023156551.1 | 0.0 | transcription factor GAMYB isoform X1 | ||||
Swissprot | A2WW87 | 0.0 | GAM1_ORYSI; Transcription factor GAMYB | ||||
TrEMBL | B4FN81 | 0.0 | B4FN81_MAIZE; Myb domain protein 81 | ||||
STRING | GRMZM2G028054_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11440.1 | 9e-68 | myb domain protein 65 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G028054_P03 |