PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G028054_P03
Common NameLOC100857038, ZEAMMB73_650135
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 492aa    MW: 53621.9 Da    PI: 6.2605
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G028054_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.6e-154996148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT  Ed +l+d+vk++G g+W+++ +   + R++k+c++rw ++l
  GRMZM2G028054_P03 49 KGPWTDAEDAILIDYVKKHGVGNWNAVRKNTELLRCGKSCRLRWANHL 96
                       79******************************99**********9986 PP

2Myb_DNA-binding51.81.9e-16102145146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        + ++T+eE+ l+++++++lG++ W++ a +++ gRt++++k++w++
  GRMZM2G028054_P03 102 KEAFTPEEERLIIQLHAKLGNK-WSRMAIHLP-GRTDNEIKNYWNT 145
                        578*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6484496IPR017930Myb domain
SuperFamilySSF466896.11E-3046143IPR009057Homeodomain-like
SMARTSM007174.7E-144898IPR001005SANT/Myb domain
PfamPF002491.1E-134996IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2350103IPR009057Homeodomain-like
CDDcd001671.57E-115196No hitNo description
PROSITE profilePS5129424.30397151IPR017930Myb domain
SMARTSM007171.4E-16101149IPR001005SANT/Myb domain
PfamPF002492.6E-15102145IPR001005SANT/Myb domain
CDDcd001677.19E-13104147No hitNo description
Gene3DG3DSA:1.10.10.606.4E-24104149IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MYRVKSQAEG EGEGKDEMMS QDQMDSPVDN DVSSSRRSPR RGVGAPLKKG PWTDAEDAIL  60
IDYVKKHGVG NWNAVRKNTE LLRCGKSCRL RWANHLRPNL KKEAFTPEEE RLIIQLHAKL  120
GNKWSRMAIH LPGRTDNEIK NYWNTRKKRC ERASLPIYPA GVRNQSSNED QQLSGDLNGG  180
ENMSNDLLSG NSLCLPDFNN DSFRAKLKAL PPQLPAVSIS NLLGQSFASK GCSFMDQVDQ  240
AGMLKQSGSA LPTLSDAIDD VISSVDQFSN DSEKLMQTLG FGYLNEANAT SKSIAPFGVA  300
LTGSHAPLNG IFSASRLTNG PSKMEPPSVQ NSRLKYTVDP AMQPTELVDP YMQSLSATPS  360
VKSECASPRN SGLFEELLHE PHALRSGKSQ QPSVRSSSSS AGTPYGTMVS SEFDMGQEYW  420
EEQPGSLLSE YAHFSGNYLA ECAPPVSAAS TDIFPLPKIS PAESPSMGSG EQALEPKHES  480
AASRTSSWKL EA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29441491106B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.367900.0aleurone
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G028054
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G028054_P03
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0385690.0BT038569.1 Zea mays full-length cDNA clone ZM_BFb0287F20 mRNA, complete cds.
GenBankBT0659790.0BT065979.1 Zea mays full-length cDNA clone ZM_BFb0129D18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241838.20.0transcription factor GAMYB
RefseqXP_020397769.10.0transcription factor GAMYB isoform X1
RefseqXP_023156551.10.0transcription factor GAMYB isoform X1
SwissprotA2WW870.0GAM1_ORYSI; Transcription factor GAMYB
TrEMBLB4FN810.0B4FN81_MAIZE; Myb domain protein 81
STRINGGRMZM2G028054_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.19e-68myb domain protein 65