PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G028046_P01
Common NameLOC100191534, ZEAMMB73_270568
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 424aa    MW: 45798.2 Da    PI: 9.1423
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G028046_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-05186209123
                        EEETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                        ++C dC+++F   ++L+ H  t H
  GRMZM2G028046_P01 186 FPCADCDEVFAKAESLELHRATrH 209
                        89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.162186210IPR007087Zinc finger, C2H2
PROSITE patternPS000280188209IPR007087Zinc finger, C2H2
SuperFamilySSF563994.12E-17211423No hitNo description
Gene3DG3DSA:3.90.228.109.6E-14214422IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MSRGAEKKNW PPSRSSSSSS SSPTSSWVAS RSMAGFYRYP SSTRTSGKDR TQPPPAPAAP  60
TQQQGDKSSS KKKRRSISIG RSITCAGSIC STKESSVMSR DRRGASSRSL RAPYVDVDVN  120
DASAAAISAT SSFNSETTVA STTTVTSSSS SSSVGTSFRG VHIRKLSGCY ECHSVFDPRS  180
FGAAAFPCAD CDEVFAKAES LELHRATRHA VWELGPEDTS RNIVEIIFQS SWPAGKQQQA  240
PVCKIERVLK VQSSDRTLER FEQYKESVRE RASSDRGRKN NPRCVADGNE LLRFHCTTFT  300
CSLGLAGSTA LCRAPPCKLC AIVRDGFRVD DDGKIATMGT SGRAHDMAQA VLSESDGDKR  360
AMLVCRVVAG RVKKKASDEK KPSEDSGFDS VSPSTEGVCS DLDQLFVFNQ RAILPCFVVI  420
YSGY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17074KKKRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G028046
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G028046_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0336370.0BT033637.1 Zea mays full-length cDNA clone ZM_BFc0115C05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130437.10.0nucleic acid binding protein
TrEMBLB4F9490.0B4F949_MAIZE; C2H2-like zinc finger protein
STRINGGRMZM2G028046_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.19e-80C2H2-like zinc finger protein