PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G028041_P01
Common NameHB132, rs1
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TALE
Protein Properties Length: 351aa    MW: 38800.6 Da    PI: 6.8916
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G028041_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox308.8e-102773122055
                        HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  GRMZM2G028041_P01 277 YKWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 312
                        4679*****************************885 PP
2ELK37.84e-13232253122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELK qLl+KYsgyL+sL+qEFs
  GRMZM2G028041_P01 232 ELKYQLLKKYSGYLSSLRQEFS 253
                        9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.8E-2288132IPR005540KNOX1
PfamPF037903.5E-2289130IPR005540KNOX1
SMARTSM012562.6E-29135186IPR005541KNOX2
PfamPF037911.9E-23141184IPR005541KNOX2
PfamPF037894.2E-10232253IPR005539ELK domain
PROSITE profilePS5121311.627232252IPR005539ELK domain
SMARTSM011881.2E-7232253IPR005539ELK domain
PROSITE profilePS5007112.892252315IPR001356Homeobox domain
SuperFamilySSF466891.24E-19253326IPR009057Homeodomain-like
SMARTSM003894.4E-13254319IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.7E-28257316IPR009057Homeodomain-like
CDDcd000861.82E-12264316No hitNo description
PfamPF059209.8E-17272311IPR008422Homeobox KN domain
PROSITE patternPS000270290313IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MDQSFGNLGA GAGSSSGGSN SKAAAAAVSS SSFLQLPLST ASPAYYGAPL ALLHHAAAAP  60
SSSQQHQQQQ HHHHYARHGA EMSAAEAEAI KAKIVAHPQY SALLAAYLDC QKVGAPPDVL  120
ERLTAMAAKL DARPPGRHEP RDPELDQFME AYCNMLVKYR EELTRPIDEA MEFLKRVEAQ  180
LDCISGGGGS SSARLSLADG KSEGVGSSED DMDPNGREND PPEIDPRAED KELKYQLLKK  240
YSGYLSSLRQ EFSKKKKKGK LPKEARQKLL HWWELHYKWP YPSETEKIAL AESTGLDQKQ  300
INNWFINQRK RHWKPSEDMP FVMMEGFHPQ NAAALYMDGP FMADGMYRLG S
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.952820.0ear| meristem| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G028041
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the shoot apical meristem in a circular pattern preceding leaf initiation, but is not detectable in leaf primordia or mature leaves in normal plants. Rings of RS1 expression subtend leaf insertion sites in the shoot, and lateral organ primordia in inflorescence and floral meristems.
Functional Description ? help Back to Top
Source Description
UniProtPlays a possible role in patterning the placement of lateral organs along the axis of the shoot. Mutations in RS1 alters cell fate and causes unregulated cell division and expansion in the leaf. Probably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G028041_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0333610.0BT033361.1 Zea mays full-length cDNA clone ZM_BFb0146E21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105331.20.0homeobox protein rough sheath 1
SwissprotQ418530.0RSH1_MAIZE; Homeobox protein rough sheath 1
TrEMBLB4F8C30.0B4F8C3_MAIZE; HB transcription factor
STRINGGRMZM2G028041_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-104KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Schneeberger RG,Becraft PW,Hake S,Freeling M
    Ectopic expression of the knox homeo box gene rough sheath1 alters cell fate in the maize leaf.
    Genes Dev., 1995. 9(18): p. 2292-304
    [PMID:7557382]
  2. Kerstetter R, et al.
    Sequence analysis and expression patterns divide the maize knotted1-like homeobox genes into two classes.
    Plant Cell, 1994. 6(12): p. 1877-87
    [PMID:7866030]