PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G028039_P02
Common NameLOC100383464, LOC103627691, ZEAMMB73_167139
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 545aa    MW: 60793.6 Da    PI: 6.2568
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G028039_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4156.7e-1271745441373
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l++++++c +av++ ++   +al+++l+e++s +g+pmqRl ay++e+L arl+ +++ lyk+l+++e    +sse l++++l++e++P++k
  GRMZM2G028039_P02 174 LRQVIVACGKAVDE-NAVYMDALMSELREMVSVSGEPMQRLGAYMLEGLIARLSFTGHALYKSLKCKEPV-ATSSELLSYMHLLYEICPFFK 263
                        67899*******98.77789************************************************97.789****************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                        f+++ aN aI eav+ge+ +HiiDf+i qG QW++++qaLasRp+  p lRiTg+++++s   +   l  +g+rL+++A+++g+pfefn+ v
  GRMZM2G028039_P02 264 FGYMSANGAIAEAVKGEDIIHIIDFQIAQGSQWMTMIQALASRPGRRPYLRITGIDDSNSAhaRGGGLDMVGQRLHRMAQSCGLPFEFNA-V 354
                        *********************************************************8888889999***********************.6 PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                          + +++ +e+L +++gEa++Vn+++qlh+++desv +e++rd++L++vkslsPkvv++veqea++n+++F+ r +e+l+yy+a+f+++++ 
  GRMZM2G028039_P02 355 PAASHEVVFEDLCLRSGEAIVVNFAYQLHHTPDESVGIENHRDRILRMVKSLSPKVVTLVEQEANTNTAPFFLRYMETLDYYTAMFEAIDVA 446
                        88899999************************************************************************************ PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                         pr++++ri+ E+++++r+ivn++acegaer+erhe ++kWr+rl +aGF+p+pls  ++ ++k+ll  ++s+ yr+ee++g l+lgWk+r+
  GRMZM2G028039_P02 447 CPRDDKKRISTEQHCVARDIVNLIACEGAERIERHEPFGKWRARLVMAGFRPYPLSPVVNRTIKTLLDSYHSH-YRLEERDGILYLGWKNRK 537
                        ***********************************************************************77.****************** PP

               GRAS 367 LvsvSaW 373
                        Lv+ SaW
  GRMZM2G028039_P02 538 LVVSSAW 544
                        ******* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.065148526IPR005202Transcription factor GRAS
PfamPF035142.3E-124174544IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MPIKFALENM STQASNRSYR YPDRTQLPYH NGNPMHVGGN GNYCVQQNHD DVNYISSDDG  60
SQSSSSRVQD FQAQFCTLDS SSANCVYPAH SSTSSQSISG SPLSQQESHS DHAYGSSPSA  120
SCITQVPTWT LKDLENVMLG PDSDIGSPDS SFLLDTALHG NNWRELLGIQ TGDLRQVIVA  180
CGKAVDENAV YMDALMSELR EMVSVSGEPM QRLGAYMLEG LIARLSFTGH ALYKSLKCKE  240
PVATSSELLS YMHLLYEICP FFKFGYMSAN GAIAEAVKGE DIIHIIDFQI AQGSQWMTMI  300
QALASRPGRR PYLRITGIDD SNSAHARGGG LDMVGQRLHR MAQSCGLPFE FNAVPAASHE  360
VVFEDLCLRS GEAIVVNFAY QLHHTPDESV GIENHRDRIL RMVKSLSPKV VTLVEQEANT  420
NTAPFFLRYM ETLDYYTAMF EAIDVACPRD DKKRISTEQH CVARDIVNLI ACEGAERIER  480
HEPFGKWRAR LVMAGFRPYP LSPVVNRTIK TLLDSYHSHY RLEERDGILY LGWKNRKLVV  540
SSAWC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-581765446374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.45190.0ear| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G028039
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G028039_P02
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0672840.0BT067284.1 Zea mays full-length cDNA clone ZM_BFb0379I09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340337.10.0uncharacterized protein LOC100383464
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A1D6PIF40.0A0A1D6PIF4_MAIZE; Uncharacterized protein
TrEMBLA0A3L6DGR50.0A0A3L6DGR5_MAIZE; Chitin-inducible gibberellin-responsive protein 2
STRINGGRMZM2G028039_P020.0(Zea mays)
STRINGGRMZM5G885274_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Representative plantOGRP14091447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]