PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G027972_P01
Common NameLOC103654474, ZEAMMB73_355776
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 729aa    MW: 78734.7 Da    PI: 7.3422
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G027972_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.91.5e-31277333259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +DgynWrKYGqK+vk+se+prsYY+Ct+++Cpvkkkvers  +++v+ei+Y+g+H+h+
  GRMZM2G027972_P01 277 EDGYNWRKYGQKQVKNSEHPRSYYKCTHPSCPVKKKVERSV-EGHVTEIVYRGSHTHP 333
                        7****************************************.***************7 PP
2WRKY37.45e-12485507123
                        ---SS-EEEEEEE--TT-SS-EE CS
               WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                        ldDgy+WrKYGqK+vkg+++prs
  GRMZM2G027972_P01 485 LDDGYRWRKYGQKVVKGNPNPRS 507
                        59********************8 PP
3WRKY55.21.4e-175385762159
                        -EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY  21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         rsYY+Ct+agC+v+k+ver+++d k v++tYeg+Hnhe
  GRMZM2G027972_P01 538 RRSYYKCTYAGCSVRKHVERASNDLKSVITTYEGKHNHE 576
                        69************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-28274335IPR003657WRKY domain
SuperFamilySSF1182903.66E-25275335IPR003657WRKY domain
SMARTSM007742.3E-34276334IPR003657WRKY domain
PfamPF031062.1E-24277333IPR003657WRKY domain
PROSITE profilePS5081121.953277335IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-34470505IPR003657WRKY domain
SuperFamilySSF1182901.26E-9477507IPR003657WRKY domain
PROSITE profilePS5081130.503480578IPR003657WRKY domain
SMARTSM007742.7E-33485577IPR003657WRKY domain
PfamPF031061.3E-7486507IPR003657WRKY domain
PfamPF031061.1E-12537576IPR003657WRKY domain
SuperFamilySSF1182901.7E-13537578IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-34539578IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0001083developmental stageinflorescence development stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MDDWMLPSPS PRTLMPSFFS EEFISTPFSN IFADDRGSKP QDENEDSNTC IGSGAHETSQ  60
DVKCHRPQIE SNIFGVNQKP TSPGGLAERI AARAGFGVLK IDISRVGSSG AAIRSPVTIP  120
SGVSPRELLE SPVFLPNAIS QPSPTTGKLP FLMPNNFKST MLCGPEKSED HLHEDSAFSF  180
QPFLRSKPPT LWTAKKGPSV VHETGSLSKD SQEELNLHAN PAAATEHETE ESLVIRPKAC  240
DSMFDNGHPS SPDEGPEQSE ENQNREDCSA PVTAPGEDGY NWRKYGQKQV KNSEHPRSYY  300
KCTHPSCPVK KKVERSVEGH VTEIVYRGSH THPLPLPSRR SSVPPTQLEC GSQSDGLENL  360
SSKPGPAYHS AASQSQGIAP DGQFQDVHRE ALETKLSGSL TTTEIADRPV MDVSSTLSSN  420
ENGDRAVPPT NGRNEDETES KRRKMEASAA TNTTTNTGID MAAMASRASR EPRIVVQTTS  480
EVDILDDGYR WRKYGQKVVK GNPNPRSVPF LYQETNQVEF PVAERTHART RTLLLPARRS  540
YYKCTYAGCS VRKHVERASN DLKSVITTYE GKHNHEVPAA RNSGNGHPSS GSTPAPPQGS  600
GGLHRRLEPP QVSIPRLSAA AAAAAAAAAY GSLSLRFPPQ LSAAPGGFSF GMLRPTGMAP  660
SLGGFLPAQM PGRGLPMQGC AGLVLPRGEA KVVSPEQQSG LPVANGNAAA TYQQQQQQLM  720
ARWAQGHQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-30277579878Probable WRKY transcription factor 4
2lex_A7e-30277579878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G027972
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G027972_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9089043e-97FJ908904.1 Zea mays subsp. mays Mu tranposon insertion Mu1002738 flanking sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020408391.10.0probable WRKY transcription factor 2
TrEMBLK7UNB80.0K7UNB8_MAIZE; Putative WRKY DNA-binding domain superfamily protein
STRINGGRMZM2G027972_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.12e-96WRKY DNA-binding protein 2