PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G027563_P02

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

bHLH

Protein Properties

Length: 316aa MW: 32049.2 Da PI: 11.0854

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G027563_P02	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.5	1.6e-10	128	173	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+ +a K +Ka++L + ++Y+k Lq GRMZM2G027563_P02 128 HSIAERLRRERIAERMKALQELVSNA-----NKTDKASMLDEIIDYVKFLQ 173 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.49E-12	121	176	No hit	No description
SuperFamily	SSF47459	3.01E-15	121	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.647	123	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-14	125	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.3E-8	128	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.5E-12	129	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MAGTGIRGGR EGAGWRRAGG GDGTPAAALW WGVVRRLVAG RGEIAGSVFG GSFVGSLQQQ 60 QHFQSHHPQQ QTAPPLPGQG FGGGGRGGGR AGAPGGMSQP QAGAAVGGAA APPRQRVRAR 120 RGQATDPHSI AERLRRERIA ERMKALQELV SNANKTDKAS MLDEIIDYVK FLQLQVLSMS 180 RLGGAARSRQ GRDGAAAAAG SDGLAVTEQQ VAKLMEEDMG TAMQYLQGKG LCLMPVSLAA 240 AISSATCHMR PPVGGPGVAA GHHMAAMRLP HVTNGGAGAD DVSASPSMSM LTTPSAMPNG 300 AGAGVDGKDA ASVSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	137	RLRRER

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.29585	1e-107	meristem

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G027563

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G027563_P02

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT062076	1e-104	BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
GenBank	KJ727938	1e-104	KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001357703.1	1e-164	transcription factor bHLH69
Swissprot	Q9ZUG9	1e-69	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A1D6I4D4	0.0	A0A1D6I4D4_MAIZE; Transcription factor bHLH69
STRING	GRMZM2G027563_P01	0.0	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	1e-42	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	GRMZM2G027563_P02

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]