PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G027563_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 344aa    MW: 34857.2 Da    PI: 7.8193
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G027563_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.8e-10156201555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h+++Er RR+ri +++  L+el+ +a      K +Ka++L + ++Y+k Lq
  GRMZM2G027563_P01 156 HSIAERLRRERIAERMKALQELVSNA-----NKTDKASMLDEIIDYVKFLQ 201
                        99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.27E-12149204No hitNo description
SuperFamilySSF474593.4E-15149209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.647151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-14153208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-8156201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-12157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MVAASQISLD DLRAAAGAAG GVHDDFLDQM FGGLPPSAWP ELASVAGGKA PDGGAQAEGM  60
EHQPQHFGRG EIAGSVFGGS FVGSLQQQQH FQSHHPQQQT APPLPGQGFG GGGRGGGRAG  120
APGGMSQPQA GAAVGGAAAP PRQRVRARRG QATDPHSIAE RLRRERIAER MKALQELVSN  180
ANKTDKASML DEIIDYVKFL QLQVLSMSRL GGAARSRQGR DGAAAAAGSD GLAVTEQQVA  240
KLMEEDMGTA MQYLQGKGLC LMPVSLAAAI SSATCHMRPP VGGPGVAAGH HMAAMRLPHV  300
TNGGAGADDV SASPSMSMLT TPSAMPNGAG AGVDGKDAAS VSKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160165RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.295851e-107meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G027563
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G027563_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620761e-104BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
GenBankKJ7279381e-104KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001357703.11e-142transcription factor bHLH69
SwissprotQ9ZUG94e-73BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A1D6I4D40.0A0A1D6I4D4_MAIZE; Transcription factor bHLH69
STRINGGRMZM2G027563_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.17e-42LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]