PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G027309_P02 | ||||||||
Common Name | Zm.20269 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 338aa MW: 38372.6 Da PI: 4.8578 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 77 | 4.2e-24 | 24 | 121 | 35 | 128 |
NAM 35 kevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektd 120 ++ +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r ++ + +W++tg++k+vl+ +g++ g+kk++v+y + k+ekt+ GRMZM2G027309_P02 24 EDEGICYTHPQKLP-GVKQNGSVSHFFHRTFKAYNTGTRKRRRINtddaDVRWHKTGNTKPVLV-DGKHLGCKKIMVLYisPLKGGKAEKTN 113 3457**********.667778899*****************96443466789************.999***********6523777778*** PP NAM 121 Wvmheyrl 128 Wv+h+y+l GRMZM2G027309_P02 114 WVIHQYHL 121 ******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 22.729 | 1 | 140 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.35E-26 | 13 | 140 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.0E-7 | 33 | 121 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MAKHGKSGIK PHPFIDEFIP TVEEDEGICY THPQKLPGVK QNGSVSHFFH RTFKAYNTGT 60 RKRRRINTDD ADVRWHKTGN TKPVLVDGKH LGCKKIMVLY ISPLKGGKAE KTNWVIHQYH 120 LGTGEDERDG EYVVSKIFFQ QQFKPRDKNA QELTTSDDLE SMAAESNLPD FTTLPTDKHV 180 GTVQEVVHNP EHNLYQLNRN CEINIEETVV LPPSVKTTKD GDNLQSQDQK LWEGDSQFEL 240 LDSQQLAEGL ALCDEFLLSQ SQTSCGGGDE PRETKPCLAA YAHLSAEDFK KDLEECQRLE 300 PTDNTNLELD NTDEFRLSQI EFSQDSFMTW AAEKITDD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 60 | 64 | RKRRR |
2 | 61 | 65 | KRRRI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.20269 | 0.0 | meristem| ovary| pollen| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G027309 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G027309_P02 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055862 | 0.0 | BT055862.1 Zea mays full-length cDNA clone ZM_BFb0341H11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001348999.1 | 0.0 | uncharacterized protein LOC100280252 | ||||
Swissprot | Q6NQK2 | 2e-98 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A3L6E7Y9 | 0.0 | A0A3L6E7Y9_MAIZE; Uncharacterized protein | ||||
TrEMBL | B8A2S0 | 0.0 | B8A2S0_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G027309_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-101 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G027309_P02 |