PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G026926_P01 | ||||||||
Common Name | EREB154, LOC103646159, Zm.35228 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 452aa MW: 48127.2 Da PI: 9.2802 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.4 | 1.7e-18 | 213 | 263 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f++ae+Aa a+++ + kl+ge GRMZM2G026926_P01 213 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDSAEDAAMAYDREAFKLRGE 263 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.78E-32 | 212 | 271 | No hit | No description |
PROSITE profile | PS51032 | 22.787 | 213 | 270 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.7E-37 | 213 | 276 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-31 | 213 | 271 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-23 | 213 | 272 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.2E-12 | 214 | 263 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-10 | 214 | 225 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-10 | 236 | 252 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MDASSESGGA GGGRGGRRWK GKGVTPIQPR RTQLAPVMED ASAALLRPLK KIGRAPDRFQ 60 RSASSLSTTS SSAPPSPRSS AAGATSPASL SPPSARHMFP FAYEPSAPLG GAPRLELPPP 120 WQHSPSVSQP ASPQQQQQQQ AQAPVQRQQQ MISFGAPPQY QAQFLLPEGA QQQQHLLRYW 180 SEALNLSPRG GQAAGVLPSL YQHLLRPPPP QKLYRGVRQR HWGKWVAEIR LPRNRTRLWL 240 GTFDSAEDAA MAYDREAFKL RGENARLNFP DRFFGKGYAG GSGRTSATPA AAPTAAAASG 300 STSSSSPPQT PDDPSTQQTP PDAERSLDKQ PQPPVATSSQ LEGSSGEPTL ADSGQMIHSP 360 EPPAGSDWGP ADEAWLNAWG PGSSFWDYDI DSTRGLFLHH GRFAGDEAGI NTATTAAATG 420 TDMPCDHVPV TPASSSSPLH SQSPHSPSFM DH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-19 | 212 | 272 | 4 | 65 | ATERF1 |
3gcc_A | 2e-19 | 212 | 272 | 4 | 65 | ATERF1 |
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Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G026926 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G026926_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727513 | 0.0 | KJ727513.1 Zea mays clone pUT5372 AP2-EREBP transcription factor (EREB154) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020404395.1 | 0.0 | ethylene-responsive transcription factor ERF054 | ||||
TrEMBL | A0A060D6Q3 | 0.0 | A0A060D6Q3_MAIZE; AP2-EREBP transcription factor (Fragment) | ||||
STRING | GRMZM2G026926_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3691 | 32 | 68 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28140.1 | 8e-37 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G026926_P01 |
Entrez Gene | 103646159 |