PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G026742_P03
Common NameLOC100193428, ZEAMMB73_850342
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 407aa    MW: 45317.6 Da    PI: 4.7595
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G026742_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.42.6e-34511432103
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d++++ +isws+ g sfv++d++ f++++Lp++Fkh++f+SF+RQLn+YgF+kv+ ++         we++++ F kg+k+l
  GRMZM2G026742_P03  51 FLTKVYDMVSDPATDAVISWSAGGGSFVIWDSHVFERDLLPRHFKHNHFTSFIRQLNTYGFHKVDPDR---------WEWANEGFIKGQKHL 133
                        9****************************************************************999.........*************** PP

                        XXXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkkse 103
                        l++ikrkk++
  GRMZM2G026742_P03 134 LKTIKRKKKS 143
                        *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.58E-3447140IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.3E-5547140IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.3E-3648140IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.8E-3051140IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.3E-185174IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.3E-1889101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.3E-18102114IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGSKKRSPQH PASPAGGEVG AQAAGKATPV TAAPETAPVA VVPKPPDVAP FLTKVYDMVS  60
DPATDAVISW SAGGGSFVIW DSHVFERDLL PRHFKHNHFT SFIRQLNTYG FHKVDPDRWE  120
WANEGFIKGQ KHLLKTIKRK KKSSQDVPSD LQSVPVKTAP GTENIEIGKY GGLEKEVETL  180
KRDKALLMQQ LVDLRQYQQT SSLEVQSLIQ RLRVMEQNQQ QMMALLAIVV HNPDFLNQLV  240
QQQCRSNWWN DDGNRKRRFQ ALEHGPVDDS ETSGGGAQII QYCPPVPETS NQPTPANEAF  300
CSSPVQSVSS HALEMPMDVE MASNNVGTLD STGNDFTDTS ALCEWDDMDI FGGGLEHILQ  360
QTEQDFQVDP LTIEDYGYDR PWLEQDCQVE AQQNCKNPQY ADVITEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-244514314123Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.308020.0endosperm| meristem| sheath
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G026742
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G026742_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0356890.0BT035689.1 Zea mays full-length cDNA clone ZM_BFb0077D11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132022.10.0Heat stress transcription factor A-8
RefseqXP_008658110.10.0heat stress transcription factor A-8 isoform X1
SwissprotQ10PR40.0HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBLB4FF010.0B4FF01_MAIZE; Heat stress transcription factor A-8
STRINGGRMZM2G026742_P040.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.16e-70heat shock factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]