PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G026417_P01 | ||||||||
Common Name | LOC100275086 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GeBP | ||||||||
Protein Properties | Length: 383aa MW: 40715.6 Da PI: 5.1361 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 102.9 | 2.7e-32 | 63 | 162 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkif 89 lfqrlw++eDeiv+L+++ +f+a++g+ +++ d++ fye ++++++ ++k+qlveKirrLK+K++++v++ + g ++f+++h+q if GRMZM2G026417_P01 63 LFQRLWTDEDEIVILRAFAEFTAQRGTafASHQyDTTPFYEDMRRRLNTGFTKNQLVEKIRRLKRKYRNCVERlRVAGAGFNFRSPHEQAIF 154 79*************************9977778***************************************88899************** PP DUF573 90 elskkiWg 97 e+++ iW+ GRMZM2G026417_P01 155 EIARTIWR 162 *******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 7.2E-30 | 64 | 161 | IPR007592 | Protein of unknown function DUF573 |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MFPTVDDPSA AGAMVSASFP DADAYGNGDS DDLDFPVDPN PNPVFSSPAA PASAGAAGER 60 RPLFQRLWTD EDEIVILRAF AEFTAQRGTA FASHQYDTTP FYEDMRRRLN TGFTKNQLVE 120 KIRRLKRKYR NCVERLRVAG AGFNFRSPHE QAIFEIARTI WRPASDKHGR DSDDEGGGGG 180 NNAHDATFAM DAATFAIDAA LAAANGGSAK SPTSRPRRGR RRRTGDFPAD AVPETTLALP 240 PAPMPVMTED VLPSFPQVTA AAVMDGGCGV SVDPASGLPA ALSTAAAAAA VSGSSTAENP 300 ILAALFKEMV HAMLSVGVGG STALLGLEPP PPIAGVPMEG EKWRQQRIQE LEVYLRRIDL 360 LQDQARAALD ELRSAPHAGG MNT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.80211 | 0.0 | pericarp| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G026417 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G026417_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT087680 | 0.0 | BT087680.1 Zea mays full-length cDNA clone ZM_BFb0156A22 mRNA, complete cds. | |||
GenBank | EU954230 | 0.0 | EU954230.1 Zea mays clone 1459363 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001142743.1 | 0.0 | uncharacterized protein LOC100275086 | ||||
TrEMBL | B6SNB5 | 0.0 | B6SNB5_MAIZE; Putative transcription factor | ||||
TrEMBL | K0DFD9 | 0.0 | K0DFD9_MAIZE; GBP18 GeBP type transcription factor (Fragment) | ||||
STRING | GRMZM2G026417_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 | Representative plant | OGRP3184 | 10 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 1e-31 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G026417_P01 |
Entrez Gene | 100275086 |
Publications ? help Back to Top | |||
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