PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G025002_P01
Common NameLOC103647123, Zm.129331
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 456aa    MW: 46839.4 Da    PI: 6.8452
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G025002_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA529.6e-17373407135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++C++ +Tp+WR gp+g  tLCnaCGl+y+ ++l
  GRMZM2G025002_P01 373 CRHCHSPDTPQWRTGPNGRATLCNACGLRYAGHRL 407
                        *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.9E-13366427No hitNo description
PROSITE profilePS5011411.622367405IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-14367421IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.0E-14371407IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.19E-14372428No hitNo description
PROSITE patternPS003440373398IPR000679Zinc finger, GATA-type
PfamPF003202.5E-14373407IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MPLPPPNMRT QEPHPWLRDA PDDLPDCDGT GACFPGGGLC YPDDPLELVH SLFPAQTTVD  60
RSALGIGTSA GEPPCREQEQ PLAESAYGGG GSGGRNSCGL SSYVLEGLSG LEEIDTNMFF  120
ADDALDGGGG GGGGEATQDN LPCDSTGAKP KPPAHMPEAG DVHASPLPAH MLPGALQAYD  180
ACRAFHGASP PMAAGGPLPD FVTNDGAPMP AAAGLHACGA LPGIVSNGAS KPPSCRAFHG  240
ASPPTAAGGP LSVFVTNNGA PMPGAAAGLH ACVVVLPGIV SIGASGPPRM EPMPARASLH  300
PNAAPAHAPP PPSPPSSSAS SGSGRCPSSA TSGTEFLQPH AWVVPRRQRS LPTGARRSRS  360
APRQRNMQAQ KVCRHCHSPD TPQWRTGPNG RATLCNACGL RYAGHRLVPE YRPLTAPSFR  420
SGQHSNRHRN VMKLREQMKA AATEEEPSEQ PTEGNT
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G025002
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G025002_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9729720.0EU972972.1 Zea mays clone 390973 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008669904.10.0zinc finger protein 703
TrEMBLA0A1D6EIM00.0A0A1D6EIM0_MAIZE; GATA transcription factor 14
TrEMBLA0A3L6G8760.0A0A3L6G876_MAIZE; GATA transcription factor 12
STRINGGRMZM2G025002_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16076913
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.18e-24GATA transcription factor 4