PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G024898_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 505aa    MW: 53053.1 Da    PI: 5.0789
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G024898_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.4e-31243301259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  GRMZM2G024898_P01 243 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRNDPNMLVITYTSEHNHP 301
                        699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.822237303IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.4E-31240303IPR003657WRKY domain
SuperFamilySSF1182902.09E-26241303IPR003657WRKY domain
SMARTSM007741.2E-37242302IPR003657WRKY domain
PfamPF031068.1E-26244301IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MCDYFLPRME GDQAGGGDLT DIVRSGGAIP GNAADTPSTA AADEWQLQGD ATMLFPPLPS  60
STTASEVGCA AVFGTDPFSG LVDPFSTDYS SGADFLDAMP DAMAKVGFDT TAICGGSGSG  120
SGCRGGGGGQ LIDMSRKQQP LLPRGLQMPA VGGVLTPRVV LPSPLSPREI RPYPALAGDM  180
VKLGITAGQV AGCAIDAAVV DMQMSSPRAA GGIKRRKNQA RKVVCIPAPT AAGGRPTGEV  240
VPSDLWAWRK YGQKPIKGSP YPRGYYRCSS SKGCSARKQV ERSRNDPNML VITYTSEHNH  300
PWPTQRNALA GSTRNHHSKN SGGSSGSKNE KQQQQSNTDV KEEPNKDPAT TTTTTTTTST  360
ITTMTTSASP AAVVKEETLA AGSSEAPLGQ VMDTAAAAVD HSIELMDQVF SCESYKPMMI  420
PEAGGHSSDD FFSDLAELES DPMSLIFSRE YMEAKPSGGD GDHRGHQEKA MTSKDLDPLF  480
DMLDWSANSS SSAVSSSFEQ QGNRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-24217304280Disease resistance protein RRS1
5w3x_D3e-24217304280Disease resistance protein RRS1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G024898
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G024898_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0731009e-94AK073100.1 Oryza sativa Japonica Group cDNA clone:J033016K09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008668957.10.0probable WRKY transcription factor 14
TrEMBLA0A1D6E0T70.0A0A1D6E0T7_MAIZE; Putative WRKY transcription factor 35
STRINGGRMZM2G024898_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-64WRKY DNA-binding protein 35