PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G024655_P01 | ||||||||
Common Name | C3H42, LOC103634705, ZEAMMB73_397300, Zm.32970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C3H | ||||||||
Protein Properties | Length: 166aa MW: 18003.3 Da PI: 8.477 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.3 | 6.1e-09 | 65 | 87 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C++f rtG CkyGd+C++ H++ GRMZM2G024655_P01 65 ICHHFVRTGACKYGDSCRYFHPK 87 7********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00451 | 1.7E-5 | 3 | 38 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 3.26E-16 | 4 | 48 | No hit | No description |
Pfam | PF06220 | 7.6E-11 | 5 | 37 | IPR013085 | Zinc finger, U1-C type |
PROSITE profile | PS50103 | 14.756 | 60 | 88 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.1E-4 | 62 | 87 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.67E-7 | 64 | 88 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-5 | 65 | 85 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.7E-7 | 65 | 87 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MPLGKYYCDY CDKQFQDTPA ARKRHLQGVQ HQRARALWYD SIRHQDQHGG ASSLLLPDGT 60 LAKGICHHFV RTGACKYGDS CRYFHPKPNG VNPALAAPGL GSGPAPMVQQ SDIIGNQPNF 120 VVYQGVDINS SSGKILGGHA SWGNLPPSLQ PPPEGGYPPL PFIDWG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.32970 | 0.0 | shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G024655 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G024655_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727992 | 0.0 | KJ727992.1 Zea mays clone pUT6112 C3H transcription factor (C3H42) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001340157.1 | 1e-120 | zinc finger CCCH domain-containing protein 3 | ||||
Swissprot | Q0JP11 | 1e-73 | C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | K7VP35 | 1e-119 | K7VP35_MAIZE; C2H2 and C2HC zinc fingers superfamily protein | ||||
STRING | GRMZM2G024655_P01 | 1e-120 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12617 | 23 | 26 | Representative plant | OGRP8539 | 12 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 2e-28 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G024655_P01 |
Entrez Gene | 103634705 |
Publications ? help Back to Top | |||
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