PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G024530_P01
Common NamebHLH171, LOC732777, ZEAMMB73_884818, Zm.96245
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 481aa    MW: 51576.6 Da    PI: 4.8747
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G024530_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.8e-11331376555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h+++Er RR++i +++ +L++l+P++      K +Ka++L + ++++k Lq
  GRMZM2G024530_P01 331 HSIAERLRREKISDRMKNLQDLVPNS-----NKADKASMLDEIIDHVKFLQ 376
                        99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.55E-12324380No hitNo description
SuperFamilySSF474592.09E-16324386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.837326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-16328385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-8331376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-13332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MDFSAGSYFT SWPVNSASES YSLADGSVES YGGEGIMPPS SYFMTARSDH NLKFSVHEQD  60
STMLPNDQLT YAGARQTDLL PGETPSRDKL CENLLELQRL QNNSSLPSNL VPPGVLQHNS  120
TPGAFHPQLN TPGLSELPHA LSSSIDSNGS EVSAFLADLN AVSSASALCS TFQNASSFME  180
PVNLEAFSFQ GAQSDSVLNK TTHPNGNISV FDSAALASLH DSKEFISGRL PSFASVQETN  240
VAASGFKTQK QEQNAVCNVP IPTFTARNQI AVAAMPGSLI PQKIPSWINE NKSEGPVSHP  300
SDVQIQPNSV GNGVGVKPRV RARRGQATDP HSIAERLRRE KISDRMKNLQ DLVPNSNKAD  360
KASMLDEIID HVKFLQLQVK VLSMSRLGAP GAVLPLLAES QTEGYRGQLL SAPTNAQGLL  420
DTEESEDTFA FEEEVVKLME TSITSAMQYL QNKGLCLMPV ALASAISTQK GVSAASIPPE  480
Q
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.962450.0cell culture| embryo| endosperm| meristem| pericarp| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G024530
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G024530_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0335710.0BT033571.1 Zea mays full-length cDNA clone ZM_BFb0223I07 mRNA, complete cds.
GenBankBT0879880.0BT087988.1 Zea mays full-length cDNA clone ZM_BFb0341G16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659041.10.0bHLH transcription factor PTF1 isoform X1
TrEMBLB4F8Y30.0B4F8Y3_MAIZE; BHLH transcription factor
STRINGGRMZM2G024530_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-51LJRHL1-like 3