PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G024054_P05
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 784aa    MW: 83343 Da    PI: 7.8462
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G024054_P05genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.2e-08727776147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        r++W++ E e l+++v ++G g+Wk I    +   + R+  ++k++++++
  GRMZM2G024054_P05 727 RKKWSKIEIETLLEGVDKYGIGNWKDIKLAYPgvfEERSTVDLKDKFRNL 776
                        789********************************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-9725781IPR009057Homeodomain-like
SuperFamilySSF466892.73E-12725777IPR009057Homeodomain-like
PROSITE profilePS512939.363725781IPR017884SANT domain
SMARTSM007171.0E-7726779IPR001005SANT/Myb domain
PfamPF002492.1E-6727776IPR001005SANT/Myb domain
CDDcd116608.00E-19728778No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MQSLTLCAMK ELRLYENSEK ALLSSTSANG TAILRVVQAL SSLVSTLQDR KDPEQPAEKD  60
HSDAVSQISE INTALDALWL ELSNCISKIE SSSEYASNLT PASASAATLT AGVAPPLPAG  120
TQNRRTQGLL GRSGIRRRGA AGFGIGDGAE VARANLPEVT GAAGFAGGAQ RDLAAATQSC  180
ASSPIYGDGA FASTVYPSPK RWAADLPNHQ ELKSKFLSRT SARRPANLMA LVDAKAAGAS  240
TSTVAAAPTV EHLLFLVVLD GVETPIHEGT LYGSAGGTVT VTGPGQLSAD GLESVLVRGG  300
GTGAGAVRFT LCADAAAEGV GAACFERCGA ARVEGAREVS VSSCRAVEVE RAGRVTLDRC  360
RDARLRGGGA LRATRCRRAD VESFGGVRLA RCKAARADWC GTVEVELCRA VDVRRCGAVT  420
GERCRVVNAA GCGSVEVARA VINMVEEEQP YPAAHPQQHC LVVSHIGVGI TVGIVPITMP  480
PLPAADDLLI LEFIASNRRI PHAVFNSFIA SQSPPSAFSR TSQRLRKALV LRALDAALYT  540
VGASCSSSLL LHKARKVLAD PDAAACFPHQ IPFTENEEND EARAAVADLK RLLDLEWANL  600
PPSTLELVAG DGSHQTGAAA DHTMRTKLRL FGESAKREIL AKPVQVGSAS HQSIRTQVAD  660
NASNANKADG ARRDEAHPSN SNVNYEADSD RESMWDSSDD DQPVRKRKLD PFERKPYPSP  720
TCAYKIRKKW SKIEIETLLE GVDKYGIGNW KDIKLAYPGV FEERSTVDLK DKFRNLGKRH  780
HESS
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G024054
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G024054_P05
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9652400.0EU965240.1 Zea mays clone 284741 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D6GMG00.0A0A1D6GMG0_MAIZE; TRF-like 5
STRINGGRMZM2G024054_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.14e-11TRF-like 3